Results for "ML"
Bio-Scripts
...a higher-priority channel: icu conda-forge::icu-68.1-h58526e2_0 --> pkgs/main::icu-58.2-he6710b0_3 libxml2 conda-forge::libxml2-2.9.12-h72842e0_0 --> pkgs/m...1061 days ago
List of string comparison algorithms !
String comparison: Levenshtein Distance Damerau-Levenshtein Distance Jaro Distance Jaro-Winkler Distance Match Rating Approach Comparison Hamming Distance More at https://jellyfish.readthedocs.io/en/latest/comparison.html997 days ago
- ...$ conda create -n myenv Python=3.7 $ conda env create -f environment.yml #List Available Conda Envi...t for Use $ conda activate myenv #Update Conda Environments Using a YAML File $ conda activate earth-...
976 days ago
- ...blunt ends, 6 = flat query-anchored, no identities and blunt ends, 7 = XML Blast output, 8 = Tabular ou...Hit File for PHI-BLAST [File In] default = hit_file -T Produce HTML output [T/F] default = F...
965 days ago
Installing Covid19 Environment !
...env create -f covid19-environment.yml Collecting package metadata...#################### | 100% perl-xml-parser-2.44 | 165 KB | ###...###################### | 100% pyyaml-6.0 | 188 KB | #...ly replace this directory with a symlink. For example: rm -rf /...938 days ago
- $ pangolin --update #Major update conda activate pangolin git pull conda env update -f environment.yml pip install . re-installs pangolin.
917 days ago
Rules to run fastp / Snakemake !
...RESULTS + "/fastq_trimmed/{sample}.2.trimmed.fastq", html=RESULTS + "/fastq_trimmed/{sample}.html", json=RESULTS + "/f...tput.fwd} --out2 {output.rev} --thread {threads} --cut_tail --html {output.html} --json {output....916 days ago
Run Pango on your multifasta file !
#More at https://cov-lineages.org/resources/pangolin/usage.html (base) [jnarayan@hn1 FASTA]$ conda acti...se refer to: https://scikit-learn.org/stable/modules/model_persistence.html#security-maintainability-limi...902 days ago
- ...ing-1.7.3| py38h27cfd23_1 884 KB xmltodict-0.12.0 |...The following packages will be DOWNGRADED: xmltodict...###################################### | 100% xmltodict-0.12.0 | 13 KB...
877 days ago
Installing SEVA environment in Conda !
...EVA_codes_and_files]$ conda env create -f SEVA.yaml Collecting package metadata...################################### | 100% r-htmltools-0.5.1.1 | 246 KB | #...################################### | 100% r-yaml-2.2.1 | 119 KB | #...853 days ago
