Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...y MHAP Produces highly continuous assembly (fully resolved chromosome arms) from third-generation long a...odels (using k-words) R package http://www-rcf.usc.edu/~fsun/Programs/NGS-MC/NGS-MC.html Species i...2386 days ago
Single Cell RNAseq data analysis tutorial !!
...pecies Useful for quantifying expression signatures from ensembles, e.g. in disease studies Insufficient for studying heterogeneous systems, e.g. early development...2365 days ago
Converting BLAST output into CSV
...this BLAST output. Generally, that’s the case - you want to retrieve all matches, or do a reciprocal BLAST, or something. As with most programs that run on UNIX, the text ou...2352 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subsystems in the SEED database and provid...tation pipeline that combines ab initio gene prediction algorithms with homology based methods....2346 days ago
Bioinformatics Web Application Development with Perl
...elopment The old days of CGI programs and the simple development st...tinuity or...) nor the only mechanisms for web programming with Perl...s solving new and interesting problems in simple and effective ways,...ts PSGI. Several deployment mechanisms exist to meet various busines...2336 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
BBSplit internally uses BBMap to map reads to multiple genomes at once, and determine which genome they match best. This is different than with ordinary mapping. If a...2329 days ago
PerlOneLiner for Bioinformatician
...02x", $1)/ge; print hex($ip)'perl -le 'print unpack("N", 127.0.0.1)'perl -MSocket -le 'print unpack("N", i..._aton("127.0.0.1"))' # Convert an unsigned integer to an IP addressperl -MSocket -le 'print inet_ntoa(pac...2317 days ago
List of visualization tools for network biology
...ochastic simulation software http://magnet.systemsbiology.net/software/Dizzy/ D...nnotation of biological networks http://biodata.mshri.on.ca/osprey/servlet/Index...al networks (SBML files) into standardized diagrams (Systems Biology Graphical No...2303 days ago
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
...File System ls — list items in current directory ls -l — list items in current directory and show...a star ls dir — list all items in directory dir cd dir ...Permissions ls -l — list items in current directory and show...2295 days ago
Awk for Bioinformatician and computational biologist
...line, it matches with given pattern in the given order, if matches performs the corresponding action.If n...optional, But not both.If the search pattern is not given, then Awk performs the given actions for each li...2294 days ago