Install and set up i-adhore for synteny and wgd analysis ! -- step by step --
...stalling: /home/urbe/anaconda3/envs/wgd/./post_processing/multiplicon_plot.pl -- Installing: /home/urbe/anaconda3/envs/wgd/./post_processing/plot_ghms.pl -- Installing: /home/urbe...1218 days ago
Commandline for paired end reads simulation with BBMap !
...g dna.FastaToChromArrays2 [mixed.fa, 1, writeinthread=false, genscaffoldinfo=true, retain, waitforwriting=false, gz=true, maxlen=536670912, writechroms=true, minscaf=1, midpad=500,...1005 days ago
List of string comparison algorithms !
String comparison: Levenshtein Distance Damerau-Levenshtein Distance Jaro Distance Jaro-Winkler Distance Match Rating Approach Comparison Hamming Distance More at https://jellyfish.readthedocs.io/en/latest/comparison.html997 days ago
Tadpole is 250x faster than SPADes assembler !
...Remove dead ends (aka hair). rinse=t Remove bubbles. wash= Set shave and rinse at the same time. maxshavedepth=1 (msd) Shave or rinse kmers at mos...991 days ago
Get the Linux system information !
...information program DIALOG_CANCEL=1 DIALOG_ESC=255 HEIGHT=0 WIDTH=0 display_result() { dialog --title "$1" \ --no-collapse \ --msgbox "$result" 0 0 } while...963 days ago
Downloading mmseqs databases !
# mmseqs databases Usage: mmseqs databases [options] Name...s-Prot at the output path outpath/swissprot: mmseqs databases UniProtKB/Swiss-...ore information @ https://github.com/soedinglab/mmseqs2/wiki#downloading-database...957 days ago
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Installing SEVA environment in Conda !
...######################################################################################################################################## | 100% r-hms-1.1.0 | 106 KB |...853 days ago
Install StringTie on ubuntu / Linux !
...f RNAseq data. The binary distributions are available so to install we can just download this distribution and extract it. Like with our other programs we also make a symlink to mak...838 days ago