BOL: Results for "MUMmer"

Results for "MUMmer"

- BioStar@biostar
List of tools frequently used while genome assembly
...genome assembly characteristics ANI.pl (https://github.com/chjp/ANI) CheckM (v. 1.0.7) Prokka (v. 1.12) QUAST (v. 2.3) mummer (v. not available) If...
1934 days ago
- LEGE@lege
Software for genome assembly !
...ab.org/ 10 Bandage graph assembly viewer https://rrwick.github.io/Bandage/ 11 Gepard dotter http://cube.univie.ac.at/gepard 12 MUMmer aligner and plotter http://mummer.sourceforge.net/
1348 days ago
+1 more Blogs

- Jit@jit.aber
Bambus
...ata other than specified by mate-pairs. Such sources of information include alignment to a reference genome (Bambus can directly use the output of MUMmer), physical mapping data, or i...
2823 days ago
- Jit@jit.aber
Ribbon !!
.... In addition to SAM and BAM files with long, short, or paired-end reads, Ribbon can also load coordinate files from whole genome aligners such as MUMmer. Therefore, Ribbon can be use...
2758 days ago
+12 more Bookmarks

- Jitendra Narayan@admin
Genomics for Bioinformatician
...algorithm that considers all combinations of possible exons for inclusion in a gene model and chooses the best of these combinations. The d MUMmer MUMmer is a system for rapidly align...
3947 days ago
- Rahul Nayak@rahul
Useful Publications and Websites for Deep Sequencing Data Analysis
...ariant detection Versatile and open software for comparing large genomes. Kurtz et al, Genome Biol (5(2):R12, 2004. PubMedCentral [describes the MUMmer software for full-genome alig...
3784 days ago
+6 more Top-level pages

- Abhimanyu Singh@abhimanyu
Assembly comparison https://github.com/WGLab/uniline/tree/master/src/assembly_comparison #NGS #Assembly #MUMMer
2620 days ago
- Jit@jit.aber
http://qb.cshl.edu/assemblytics/ #Analysis #Genome #Mummer #Assembly #Assemblytics
2127 days ago
+2 more Wire posts

- Jit@jit.aber
Install Nucmer on Linux / Ubuntu
...oads/MitoHunter$ sudo apt install mummer [sudo] password for jit: R...ckages will be installed: gawk mummer 0 upgraded, 2 newly installe....com/ubuntu bionic/universe amd64 mummer amd64 3.23+dfsg-3 [811 kB] F...3+dfsg-3_amd64.deb ... Unpacking mummer (3.23+dfsg-3) ... Setting up...
1554 days ago
- Jit@jit.aber
Bash script to check installed bioinformatics program !
allTools=(bwa mummer trimomatic) decFlag=0; for name in ${allTools[@]}; do #echo "enter your package name" # read name dpkg -s $name &> /dev/null if [ $...
1051 days ago

- Rahul Nayak@rahul
Comment on "SPAdes hybrid genome assembly"
...Finally, a quick comparison to the reference: sudo apt-get install mummer curl -s "http://eutils.ncbi...tmode=txt" > NC_000913.3.fa nucmer NC_000913.3.fa single_contig.fa mummerplot -png out.delta display o...
2179 days ago