Results for "MV data analysis"
Blogs
Perl one-liner for beginners !
I often use the following arguments to perl: -e Makes the line of code be executed instead of a script -n For...xt > textwithoutuppercase.txt; Print only the second column of the data whe...1373 days ago
10 NGS services companies around the globe !
...ices tools, pipelines and workflows, compute resources, data analysis reports, and case studies...provides a variety of services such as oligo synthesis, database construction, genome research, and bioservices analysis system consulting services. M...1251 days ago
Bioinformatics tools for telomere to telomere assembly !
...on from raw, short-read sequencing data to genotype a wide spectrum o...pts that can assess the quality of data and the preprocessing pipelin...)● pbaa (PacBio Amplicon Analysis) – separates comple...other low-complexity gene amplicon data; performs allele calling while de...984 days ago
Protocol for De novo Genome Assembly using Illumina Reads
...o treatments for infectious diseases. Raw NGS dataReads can be saved as a Fasta...nd what the standard is like. If required, raw data cleanup/quality trimming. Cho...otation-service/ Frequent command use for the analysis are at: https://bioinformati...1196 days ago
Ancient whole genome duplication (WGD) detection tools !
...etection, one is collinearity analysis, and the other is based on th...ave posted articles about the analysis process of WGD. I searched fo...t conda activate wgdstart our analysis environment, and then start t...l-vs-ALl + MCL classification analysis. mix: Hybrid modeling of Ks...1147 days ago
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong SH, Brener J, Ferns B, Goulder P, Nastou...-9 (2009). Trimmomatic: Trimmomatic: A flexible trimmer for Illumina Sequence Data. Bo...1039 days ago
Basic Structure of Snakemake Pipeline Run !
/user/snakemake-demo$ ls config.json data envs scripts slurm-240702.out Snakefile data = mock data for the snakefile to use Snakefile = name of the snakemake “formula” file Note...926 days ago
Illumina based assembly pipeline steps !
...r sequence removal (iVar; amplicon data only) Duplicate read marking...nd consensus; default for amplicon data || BCFTools, BEDTools; defaul...assessment report (QUAST) Lineage analysis (Pangolin) Clade assignm...rimer trimming (Cutadapt; amplicon data only) Choice of multiple assembl...869 days ago
Useful Bioinformatics Analysis Tools !
CoMeta Classificier of reads from metagenomic sequencing experiments....ce-saving solution for raw sequencing data, Bioinformatics, 20...k-mer-based compression of sequencing data, Scientific Reports,&nbs...i, L., Disk-based compression of data fro...855 days ago
- Elgg is an open-source and highly customizable framework used for building an online s...ver, is written in PHP, and uses MySQL/MariaDB as a database backend, so you will need...systemctl restart apache2 Step 3 – Create a Database...
703 days ago
