BLAST options, setting and defaults
BLAST stands for Basic Local Alignment Search Tool and was develop...NA databases. BLAST is best used for sequence similarity searching, rather than for motif searching. For searches...the NCBI BLAST Help Manual. For a theoretical overview of BLA...lt = 2 Nucleic match:reward for a ma...1987 days ago
Genome Annotation using MAKER tutorial !
MAKER is a great tool for annotating a reference genome using empirical and...a organization that includes MAKER, has some nice tutorials online for running MAKER. However, these...quite simplified examples and it took a bit of effort to...1977 days ago
Genome assembly tutorial "Genome Assembly for short and long reads"
In this lab we will perform de novo genome assembly of a bacterial genome. You will b.... At the end of the lab you will know: How to perform basic quality checks on the...n a long read assembler on Pacific Biosciences or Oxford Nan...1947 days ago
Osprey: Network Visualization System
Osprey is a software platform for the visualization of complex biological interaction networks. Osprey builds da...d is a part of the BioGRID family of software. It utilizes both MySQL&nb...1946 days ago
NxRepair: error correction in de novo assemblies using Nextera Mate Pair Reads
NxRepair is a python module that automatically detects large structural errors in de novo...ontigs and the correct, unaffected contigs. https://nxrepair.readthedocs.io/en/latest/tutorial...1942 days ago
Bioinformatics web development course
This web development course, targeted at Biology and Bioinformatics students, aims at teaching from scratch a...rver and to develop and deploy web applications for Bioinformatics. No previous...ramming knowledge is assumed. By following this tutorial...1656 days ago
Seq: A high-performance, Pythonic language for bioinformatics
Seq is a programming language for computational genomics and bioinformatics. With a Python-compatible syntax and a...and optimizations, Seq makes writing high-performance genomics software as eas...an) C/C++. Learn more by following the tutorial...1639 days ago
Machine learning training and courses in bioinformatics !
Machine learning techniques have been successful in analyzing biological dat...Markov models, and Bayesian networks) for biological sequence analysis...e/lab/teaching/spring2017-I529/ More tutorial at http://calla.r...://www.raetschlab.org/lectures/MLBioinformatic...1601 days ago
Understanding your reads and mapping !
One of the best tutorial for beginners ... https://bioinformatics-core-shared-training.github.io/cruk-summer-school-2017/Day1/Session4-seqIntro.html1572 days ago
shinyCircos: an R/Shiny application for interactive creation of Circos plot
shinyCircos, a graphical user interface for interactive creation of Circos plot. shinyCircos can be easily installed either on computers for personal use or on local or p...generated and decorated with simple mouse-click. Tutorial...1563 days ago