Perl one-liner for bioinformatician !!!
...ert unix new lines into DOS new lines:perl -pe 's|\r\n|\n|' #Convert DOS newlines into unix new lineperl -pe 's|\n|\r|' #Convert unix newlines into MAC newlines:perl -pe '/regexp/ &...3621 days ago
Commercial and public next-gen-seq (NGS) software
...approach. Commercial. Win or Mac OS X.SHORE - SHORE, for Short...Trapnell. Linux, Windows, and Mac OS X. BWA - Heng Lee's BWT Al...t projects. Requires Linux or Mac OS X. PASS - It supports Illu...nux-64, Linux-32, Solaris and Mac PolyBayesShort - A re-incarna...3511 days ago
A guide for complete R beginners !
...g/wp-content/uploads/bioinf/kerr/data.tsv Start R (type R on a Linux or Mac terminal, or find the startin...s useful if it is also the directory where your input data is stored. Mac/Linux: this is the directory...3354 days ago
Software packages for next gen sequence analysis
...features. Commercial. Win or MacOS. * SeqMan Genome Analyser -...Trapnell. Linux, Windows, and Mac OS X. * BWA - Heng Lee's BWT...at Boston College. Win/Linux/MacOSX * MrFAST and MrsFAST - mrF...nux-64, Linux-32, Solaris and Mac * PolyBayesShort - A re-incar...3235 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...types Available on Windows, Mac OS X, Linux, and the Amazon C...C++, used on Linux based and Mac computers (not tested in wind...s; software package, combines machine learning model with biolo...et in PREPLINK) Output: MAC Description: MNV Annotatio...2901 days ago
Genome Assembly Tools and Software - PART1 !!
...ing reads.System requirements64-bit machine with g++ compiler or gcc...ation massively parallel sequencing machines and the ability to proce...asks in every major genomic and pharmaceutical company as well as num...etection, available for Windows and Mac OS X. Aligner is compatible w...2678 days ago
Awesome perl frameworks, libraries and software - PART 1
...swords, EXPECT regular expressions, macros, ... noxxi/p5-ssl-tools&n...b application (http://dataurl.net), Mac OS X GUI app, command line to...ate init scripts in Perl sartak/webmachine-perl - A Perl port o...ntation for SPORE houseabsolute/webmachine-perl - A Perl port o...2482 days ago
PerlOneLiner for Bioinformatician
...ines to DOS/Windows newlinesperl -pe 's|\n|\r\n|' # Convert DOS/Windows newlines to UNIX newlinesperl -pe 's|\r\n|\n|' # Convert UNIX newlines to Mac newlinesperl -pe 's|\n|\r|'...2295 days ago
Ancestral sequence reconstruction steps !
...tree-based groups. 4.3- RDP4 for download and installation on Windows in "http://web.cbio.uct.ac.za/~darren/rdp.html" 4.4- Hyphy (Mac, Windows, Linux) in "http://h...2172 days ago