Results for "Map"
Users
About me: ...yCodeIgniterWordpressWoocommerce.Stripe API integrationPaypal IntegrationPoli payment integrationE-Commerce Google Tag ManagerAPI integrationGoogle Map integrationFacebook API integ...2196 days ago
Blogs
Tools to detect synteny blocks regions among multiple genomes
...tain minor errors resulting from limitations in map construction methodologies....ing syntenic blocks in comparative genomics SynMap (http://genomevolution.org/wi...41096) Uncovering Synteny in Distant Genomes. MapSynteny (http://www.auto...2608 days ago
BBTools for bioinformatician !
BBMap.sh Mapping Nanopore reads BBMap.sh has a length cap of 6kbp....p; Code: $ reformat.sh in=mapped.bam out=filtered.bam maxde...e I developed it to benchmark mapping algorithms, it is specifi...x the reference Code: $ bbmap.sh ref=reference.fasta [*]...2269 days ago
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Bookmarks
irishgrid: Irish Grid Mapping System
Perl module for creating geographic 10km-square maps using either SVG or PNG (with GD library) output format. Originally design to map the location of objects in a...3416 days ago
mrFAST: Micro Read Fast Alignment Search Tool
mrFAST is a read mapper that is designed to map short reads to reference genome with a specia...variation and segmental duplications. mrFAST maps short reads with respect to.... mrFAST is designed to find 'all' mappings for a given set of reads...2930 days ago
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Files
- ...al/bin/samtools sort -@ 20 -no - temporarySam > FALCON-Unzip-Scaff.bamMapping long-reads using blasr......_ctg.fa | cut -d ' ' -f1-5,7-12 | sed 's/ /\t/g' > FALCON-Unzip-Scaff.mapsh: 1: /home/urbe/Tools/SSpace...
2150 days ago
Pages
- ...bsp;By Terence Chea, Washington Post , March 14, 2002. Genome map on a grain of rice By Kr...isa Gill,NewsFactor Network , Oct. 24, 2002. The international 'HapMap' project cbsnews.com&nbs...
3919 days ago
Genome Assembly Tools and Software - PART2 !!
...ned aiming at handling complex genomes. RMAP 2.1 – Short-read MappingRMAP is aimed to map...The package contains programs that support mapping of reads to a reference g...ually any genome assembler and any NGS read mapper that supports SAM format....2684 days ago
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Top-level pages
Best book Titles for Learning Bionformatics
...Kremer, 1995, Walter De Gruyter Introduction to Computational Biology - Maps, sequences and genomes, Mich...e Genomics - Empirical and Analytical Approaches to Gene Order Dynamics, Map Alignment and the Evolution o...3916 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...ry preparation facilitates improved mapping and assembly of GC-biased...ware tools The Sequence Alignment/Map format and SAMtools. Li et al...ene expression estimation with read mapping uncertainty. Li et al, Bi...ing for rapid and efficient genetic mapping. Andolfatto et al. Genome...3778 days ago
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Wire posts
News
Webinar: Wednesday 21 August 2013 at Noon EDT
...s within BACs. Recent work in barley has shown that this level of sequence knowledge is sufficient to support critical end-point objectives such as map-based cloning and marker-assi...3918 days ago
Atlas of ancient inter-ethnic group !!!
...lations interbredings ( happen over the past 4,000 years) with an ease.The study published the findings and presented with an interactive map. http://admixturemap.paintmychromosomes.com/ Thes...3731 days ago
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Opportunity posts
- ...of raw reads. 3. Assembling the raw reads-de novo as well as reference mapping. 4. Compression of align...l expression testing involving Normalization, Statistical testing, heat map generation & hierarchical...
3641 days ago
Visiting Scientist - Computational Genomics
...data Analyze large-scale genomic datasets generated internally and through collaboration with others Genome wide analysis- LD analysis, hapmap, genetic map construction and qtl mapping...2482 days ago
Video
- Suhas Rao and Miriam Huntley (of the Aiden Lab) describe a 3D map of the human genome at kilobase resoluti...achol, Arina D. Omer, Eric S. Lander, Erez Lieberman Aiden. (2014). A 3D Map of the Human Genome at Kiloba...
3430 days ago
Bio-Scripts
Calculate some statistics for a DNA alignment with Perl
...ormat => 'fasta', -file => 't/data/nei_gojobori_test.aln'); my $alnobj = $in->next_aln; my ($seq1id,$seq2id) = map { $_->display_id } $alnobj->e...2647 days ago
Check overlapping range with Perl
#!/usr/bin/perl use strict; use warnings; my @ranges = 0; push @ranges, $ranges[-1] + 1 + int rand 200 for 1..10000; my @tests = map int rand $ranges[-1], 0..1000000; matc...2625 days ago
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Polls
Which of the following programming language is best for a bioinformatics beginner?
...will like to learn a programming language which is compatible with most bioinformatics tools or software. I basically want to do de-novo assembly, map reads, align reads, and expre...3529 days ago
Tags
BBTools for bioinformatician !
BBMap.sh Mapping Nanopore reads BBMap.sh has a length cap of 6kbp. Reads longer than this will be broken into 6kbp pieces and mapped independently. Code: $ mapPacBio.sh -Xmx20g k=7 in=reads.fastq ref=reference.fa maxlen=1000 minlen=200 idtag ow int=f qin=33 out=mapped1.sam minratio=0.15...Tags: BBMap, Map, NGS, Reads, Sam, Bam, Contamination, Filtration
2269 days ago
Comments
Comment on "URMAP, an ultra-fast read mapper"
map command Maps unpaired reads to a reference genome...ASTQ filename is specified following -map. Use "-" (minus sign) to get...umber of processor threads to use for mapping. Default is the number of...g /dev/stdout will not work because urmap attempts to create the file....1282 days ago
Comment on "REAPR: a universal tool for genome assembly evaluation"
...the assembly based on incongruently mapped reads. It is heavily based...on too low span coverage, or reads mapping too far or too close to e.... This is reads that have a perfect map to the reference. Reapr is fi...ormation on how to create a perfect mapping file, and create a perfec...1335 days ago
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