Alien_Hunter : prediction of putative Horizontal Gene Transfer (HGT) events
Alien_hunter is an application for the prediction of putative Horizontal Gene Transfer (HGT...der methods. Optionally the predictions can be parsed into a 2-state 2nd order Hidden Markov Mode...2323 days ago
AliTV—interactive visualization of whole genome comparisons
AliTV, which provides interactive visualization of whole genome alignments. AliTV r...er-friendly, web-browser based and highly customizable interface allows rapid exploration and manipulation of the visua...2321 days ago
Hercules: a profile HMM-based hybrid error correction algorithm for long reads
Choosing whether to use second or third generation sequencing platforms can lead to trade-o...error correction algorithm. The algorithm models every long read as a profile Hidden Markov Mode...2098 days ago
EXCAVATOR: detecting copy number variants from whole-exome sequencing data
EXCAVATOR, for the detection of copy number variants (CNVs) from whole-exome sequencing dat...VATOR combines a three-step normalization procedure with a novel heterogeneous hidden Markov mode...1962 days ago
ZENBU: a collaborative, omics data integration and interactive visualization system
ZENBU is a data integration, data analysis, and visualization system enhanced...of next-generation-sequence-tag (NGS) based data. ZENBU allows for novel data exploration through "on-demand" data proc...1961 days ago
HipSTR: Haplotype inference and phasing for Short Tandem Repeats
HipSTR was specifically developed to deal with these errors in the hopes of obtaining...ate STR alleles from population-scale sequencing data Employing a specialized hidden Markov mode...1899 days ago
MSAProbs - Parallel and accurate multiple sequence alignment
MSAProbs is a well-established state-of-the-art multiple sequence alignment algorithm...or protein sequences. The design of MSAProbs is based on a combination of pair hidden Markov mode...1775 days ago
1635 days ago
Machine learning training and courses in bioinformatics !
Machine learning techniques have been successful in analyzing biological data because of their capabilities...and machine learning techniques. We will focus on probabilistic models (Markov models, Hidden Markov mode...1600 days ago
modelStudio: a package automates the explanation of machine learning predictive models
The modelStudio package automates the explanation of machine learning pre...s and descriptions for various local and global explanations. Tools for model exploration unite with tools for EDA (Exp...1578 days ago