Results for "Mate pair sequencing"
Top-level pages
Genome Assembly Tools and Software - PART1 !!
...a FGAP 1.8.1 – Automated Gap Closing tool FGAP aims to i...equences, using Illumina read pairs sequenced from mixed populations a...be used to characterize novel sequencing targets. SGA 0.10.14 &nd...ecial algorithms.MAP uses the mate pair information, resulting in being mor...2699 days ago
Quick next generation sequencing (NGS) terms definition
fragment size: the Illumina WGS protocol generates paired-end reads from both ends of long...variants, mapping locations of the paired ends span within an interva...min,δmax]. Most (>90%) of paired-end reads are sampled from...p;briefly, any non-concordant read pair is co...2535 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks, libraries and softwar...sp;- A pipelining tool to automate and standardise bioinformatic...utilities for Next-Generation Sequencing (NGS) data analysis masukomi...Framework for High Throughput Sequencing analysis gbarr/perl-libnet&n...2502 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance...;k-mers profiles of the RNA-seq paired-end reads Software (Java)...rection Lighter Correction of sequencing errors in raw, whole genome sequencing reads (k-mer based) Software...ord-based (k-tuple) comparison (pairwise dissimilarity matrix using d2S...2384 days ago
- When you have both Illumina and Nanopore data, then SPAdes remai...nterlaced forward and reverse paired-end reads -1 <file...me> file with forward paired-end reads -2 <file...ile with interlaced reads for mate-pair library number <#>...
2364 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the late 00’s and has been w...biorxiv.org/content/early/2016/09/02/036558 Citrus: A toolkit for single cell sequencing analysis http://biorxiv.org/...2364 days ago
- RNA-sequencing (RNA-seq) has a wide variety of applications, but no single analysis pipeline can be used in all cases. We review all of the major steps in RNA-seq data anal...
2364 days ago
List of visualization tools for genome alignments
...nce features, next-generation sequencing (NGS) data and the resu...quences derived from multiple sequencing technologies. Low- or high-de...of huge-scale single-end and pair-end short reads http://omictools.c...quences in an entire Illumina sequencing run http://www.sourceforge.n...2297 days ago
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure and evolution as well as their impact on genome sequencing, assembly, annotation and ali...2287 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
Strand NGS is a biologist friendly NGS analysis tool that allows biologists to analyze...create pipelines for time consuming jobs which automate...rs experience in molecular biology, next-generation sequencing based testing, clinical genom...2277 days ago
