Create genome scaffolding with Perl
...t exist", $projOpts->{"query"}), -verbose => 0}); } print(STDERR "Loading query sequences into memory..."); open(my $queryFile, "=...2314 days ago
Estimate Genome Size with Jellyfish and R
...etc. #-C -both-strands Count both strands #-m -mer-len=unit32 Length of the k-mer #-s -size=unit32 Hash size / memory allocation #-o -output=...2252 days ago
2157 days ago
Install Parrot Virtual Machine !
...elp-debug -w --warnings -G --no-gc -g --gc ms2|gms|ms|inf set GC type --gc-dynamic-threshold=percentage maximum memory wasted by GC --gc-min...1543 days ago
2081 days ago
Perl script to break the contigs by 'N'
...); my @bases=split //,$seq; push(@bases,"E"); #This extra position marks the end of the contig my $n=0; #Sorry for this loop, but its less memory expensive than regular expres...2069 days ago
Installing ggplot2 and its dependencies on Ubuntu !
...... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for string...1556 days ago
1515 days ago
Tadpole is 250x faster than SPADes assembler !
...filter. prefiltersize=0.2 (pff) Fraction of memory to use for prefilter. minpro...refilter until the remaining kmers will fit in memory. onepass=f If true...This will be passed to Java to set memory usage, overriding the program...982 days ago