Recovery of complete genomes from metagenomes
...s and tutorials on how to assemble individual microbial genomes from metagenomes, as described in: Genome seq...tured bacteria obtained by differential coverage binning of multiple metagenomes Mads Albertsen, Philip...2322 days ago
2175 days ago
mmgenome: Tools for extracting individual genomes from metagneomes
The mmgenome toolbox enables reproducible extraction of individual genomes from metagenomes. It builds on the multi-metagenome concept, but wraps most of the process of extrac...2097 days ago
Dahak: benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.
Dahak is a software suite that integrates state-of-the-art open source tools for metagenomic analyses. Tools in the dahak software suite will perform various steps in met...1488 days ago
SqueezeMeta: a fully automated metagenomics pipeline, from reads to bins
...support allowing the co-assembly of related metagenomes and the retrieval of individu...etagenome Co-assembly of a large number of metagenomes via merging of individual met...via mapping of cDNA reads against reference metagenomes...1358 days ago
WAAFLE: a Workflow to Annotate Assemblies and Find LGT Events.
...mmunities, including the human microbiome. While methods exist to identify LGTs from sequenced isolate genomes, identifying LGTs from community metagenomes remains an open problem. To a...956 days ago