3164 days ago
BBTools for bioinformatician !
...robability that a read be generated from that scaffold. So, if you concatenate together 20 bacterial genomes, you can run randomreads and get a metagenomic-like distribution. It could a...2264 days ago
Frequently used bioinformatics tools for viral genome analysis !
...ed k-mer counting on a PC. Deorowicz, S., Debudaj-Grabysz, A. & Grabowski, S. BMC Bioinformatics 14, 160 (2013). Kraken: Kraken: ultrafast metagenomic sequence classification using...1041 days ago
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Genome Assembly Tools and Software - PART2 !!
...assembler. Omega 1.0.2 – Overlap-graph de novo Assembler for MetagenomicsOmega is a software for...datasets with respect to a reference genome. MetAMOS 1.5rc3 – Metagenomic Assembly pipeline for AMOSMet...2679 days ago
Awesome perl frameworks, libraries and software - PART 4
...x :( ant0ine/MongoDB-RDF - Stores RDF-JSON documents in MongoDB adrian-bl/bitflu - Bitflu BitTorrent Client MG-RAST/MG-RAST - metagenomic analysis server site code xa...2488 days ago
List of bioinformatics open source projects/software.
...cation") http://wolbachia.biology.virginia.edu/WuLab/Software.html Metagenomics analysis software Anduril...sting of gap4, gap5 and spin. STAMP Software package for analyzing metagenomic profiles that promotes &lsquo...3750 days ago
Genome Assembly Tools and Software - PART1 !!
...COCACOLA – Binning Metagenomic Contigs using Sequence COmpos...Xander – Gene-targeted Metagenomic Assembler Metagenomics can...16S ribosomal RNA Genes from MetagenOmic data an assembly tool for...nteMAP 1.0 – Integrated Metagenomic Assembly pipeline for NGS Sho...2679 days ago
NCBI to assist in Virus Hunting Data Science Hackathon
...ence in computational virus hunting or adjacent fields to identify known, taxonomically-definable and novel viruses from a few hundred thousand metagenomic datasets that we’ll put...1991 days ago
SPADes team announce new version SPADes v3.15
...the assembly of transcriptomic and metatranscriptomic data of full-length coronaviridae genomes; - Meta-Viral and RNA-Viral pipelines for metagenomic and metatranscriptomic data d...1199 days ago
Economical Opportunity transfere
...al research (Research Centers in Nutrition and Health, from Spain), focus in genomic, specialy in nutrigenomic and nutrigenetics, epigentic and metagenomic. My research groups (4 in my...3661 days ago
Bioinformatics Project Assistant at Vector Control Research Centre (VCRC), Puducherry.
...y tools. Age: Not exceeding 30 years on the last date of receipt of application Job work: Molecular modelling studies, Database curation, Metagenomic studies on Dengue virus Ad...3206 days ago
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Installing Covid19 Environment !
...age does not include: * GRIDSS (needed for structural variants detection) * SILVA 16S rRNA database (needed for reference genome detection in metagenomic datasets) * BUSCO tools and...917 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
Kraken is an ultrafast and highly accurate program for assigning taxonomic labels to metagenomic DNA sequences. Previous programs designed for this task have been relatively slow and computationally expensive, forcing researchers to use faster abundance estimation programs, which only classify sm...Tags: Bioinformatics, Kraken, Metagenomic, Sequence, Classification, Alignments, NGS
2862 days ago
Tags: Bioinformatics, Kaiju, Metagenomic, Sequence, Classification, Alignments, NGS
2862 days ago