Mugsy: multiple whole genome alignment tool
Mugsy is a multiple whole genome aligner. Mugsy uses Nucmer for pairwise alignment, a custom...iple alignment strategy from Seqan::TCoffee. Mugsy accepts draft genomes in the...oes not require a reference genome. To cite Mugsy, use: Angiuoli SV and Salzbe...2337 days ago
2043 days ago
Mugsy: multiple whole genome alignment tool
Mugsy is a multiple whole genome aligner. Mugsy uses Nucmer for pairwise alignment, a custom graph based segmentation procedure for identifying collinear regions, and the segment-based progressive multiple alignment strategy from Seqan::TCoffee. Mugsy accepts draft genomes in the form of multi-FA...Tags: Mugsy, multiple, whole, genome, alignment, tool
2337 days ago
Comment on "Mugsy: multiple whole genome alignment tool"
Set up the environment bash source /path/to/install/mugsyenv.sh Run mugsy...oid parsing problems. View or parse MAF output The output of Mugsy is Multiple Alignment Format...1283 days ago
Comment on "Alignment of closely related whole genomes/scaffolds"
Hmmm great link Rahul, You can also try Mugsy: fast multiple alignment of closely related whole genomes http://bioinformatics.oxfordjournals.org/content/27/3/334 In my works, I have...3016 days ago