GenomeMapper: Simultaneous alignment of short reads against multiple genomes
...teously or against a single reference. If you are unsure which one is the appropriate GenomeMapper, you might want to use the latter https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2...2165 days ago
CGView - Circular Genome Viewer
...l output suitable for the web. Feature information and rendering options are supplied to the program using an XML file, a tab delimited file, or an NCBI ptt file. CGView converts the...2139 days ago
FastANI: fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI)
FastANI is developed for fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI). ANI is defined as mean nucleotide identity of orthologous g...2115 days ago
2083 days ago
Mulan: Multiple-sequence local alignment and visualization for studying function and evolution
Mulan: Multiple-sequence local alignment and visualization for studying function and evolution Mulan (http://mulan.dcode.org/), a novel method and a network server fo...2074 days ago
funannotate: Eukaryotic Genome Annotation Pipeline
...ime to accomodate larger genomes. The impetus for this software package was to be able to accurately and easily annotate a genome for submission to NCBI GenBank. Existing tools (such...2048 days ago
Heatmapper: web-enabled heat mapping for all
...ore their numeric data values by hovering their cursor over each heat map, or by using a searchable/sortable data table view. Ref https://www.ncbi.nlm.nih.gov/pubmed/271902362036 days ago
Platypus: A Haplotype-Based Variant Caller For Next Generation Sequence Data
Platypus is a tool designed for efficient and accurate variant-detection in high-throughput sequencing data. By using local realignment of reads and local assembl...2012 days ago
SKESA: strategic k-mer extension for scrupulous assemblies
...when assembled multiple times with the same or different compute resources. Source code for SKESA is freely available at https://github.com/ncbi/SKESA/releases. Research Pap...1992 days ago
RepeatMasker compatible blast tool
...RepeatMasker compatible version of the standard NCBI blastn program. The primary difference between this distribution and the NCBI distribution is the addition...by adding a few necessary features to the stock NCBI blastn program. These include...1969 days ago