Results for "NGS data analysis"
Blogs
Perl one-liner for beginners !
I often use the following arguments to perl: -e Makes the line of code be executed instead of a script -n For...xt > textwithoutuppercase.txt; Print only the second column of the data whe...1384 days ago
10 NGS services companies around the globe !
...workflows, compute resources, data analysis reports, and case studies...ices such as oligo synthesis, database construction, genome research, and bioservices analysis system consulting services. M..., Next Generation Sequencing (NGS), Bioservices and solutions to dom...1263 days ago
Bioinformatics tools for telomere to telomere assembly !
● Merfin – k-mer-...om raw, short-read sequencing data to genotype a wide spectrum o...hat can assess the quality of data and the preprocessing pipelin...sp;pbaa (PacBio Amplicon Analysis) – separates comple...low-complexity gene amplicon data; performs allele calling while de...995 days ago
Protocol for De novo Genome Assembly using Illumina Reads
...for infectious diseases. Raw NGS dataReads can be saved as a Fasta...ard is like. If required, raw data cleanup/quality trimming. Cho...etween genomes from read mappings. Genome finishing tools:Semi-...Frequent command use for the analysis are at: https://bioinformati...1208 days ago
Ancient whole genome duplication (WGD) detection tools !
...etection, one is collinearity analysis, and the other is based on th...ave posted articles about the analysis process of WGD. I searched fo...t conda activate wgdstart our analysis environment, and then start t...l-vs-ALl + MCL classification analysis. mix: Hybrid modeling of Ks...1158 days ago
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong SH, Brener J, Ferns B, Goulder P, Nastou...-9 (2009). Trimmomatic: Trimmomatic: A flexible trimmer for Illumina Sequence Data. Bo...1050 days ago
Basic Structure of Snakemake Pipeline Run !
/user/snakemake-demo$ ls config.json data envs scripts slurm-240702.out Snakefile data = mock data for the snakefile to use Snakefile = name of the snakemake “formula” file Note...937 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced Fa...uence removal (iVar; amplicon data only) Duplicate read marking...nsensus; default for amplicon data || BCFTools, BEDTools; defaul...sment report (QUAST) Lineage analysis (Pangolin) Clade assignm...trimming (Cutadapt; amplicon data only) Choice of multiple assembl...880 days ago
Useful Bioinformatics Analysis Tools !
CoMeta Classificier of reads from metagenomic sequencing experiments....ce-saving solution for raw sequencing data, Bioinformatics, 20...k-mer-based compression of sequencing data, Scientific Reports,&nbs...i, L., Disk-based compression of data fro...867 days ago
- Elgg is an open-source and highly customizable framework used for build...n in PHP, and uses MySQL/MariaDB as a database backend, so you will need...file and change some recommended settings. nano /etc/php/7.4/apache2/ph...tart apache2 Step 3 – Create a Database...
714 days ago
