MEDEA: Comparative Genomic Visualization with Adobe Flash
As the number of sequence and annotated genomes grows larger, the need to understand, compare, and contrast the data becomes increasingly importan...pot outliers is necessary in such large and complex data set...2950 days ago
GATB : Genome Analysis Toolbox with de-Bruijn graph
The Genome Analysis Toolbox with de-Bruijn graph (GATB) provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets of any size on multi-core de...2948 days ago
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2934 days ago
Hagfish - assess an assembly through creative use of coverage plots
...agfish is a tool that is to be used in data analysis of Next Generation Sequencing (NGS) experiments. Hagfish builds o...coverage plots and aims to assist (amongst others) in quality control of...d a paired end re-sequencing data set. Hagfish has more power the l...2926 days ago
RCircos: an R package for Circos 2D track plots
RCircos package provides a simple and flexible way to make Circos 2D track plots with R and could be easily integrated into other R data processing and graphic manipu...resenting large-scale multi-sample genomic research data. It...2926 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-source program for mapping second and third-generation sequencing r...ces SMRT. Indeed, MOSAIK was the only aligner to provide consistent mappings for all the generated data (se...2926 days ago
2926 days ago