Results for "NGS data analysis"
Bio-Scripts
(my_GATK) [wsu29@bladeamd-2 testGATK]$ conda update -n base -c defaults conda Collecting package metadata (current_repodata.jso...1539 days ago
To convert just one specific read group to fastq
# Stop script on error. set -uex # The SRR BioProject number for the sequencing data. PROJECT=PRJNA257197 # The number of datasets to subselect from the project. N=5 # Get the..., | grep SRR | head -$N > selected.txt # Store the data in...1535 days ago
- $MT:~/Downloads/cgr-perl$ sudo apt-get install gnuplot [sudo] p...led: aglfn gnuplot gnuplot-data gnuplot-qt libdouble-conversi...bionic/universe amd64 gnuplot-data all 5.2.2+dfsg1-2ubuntu1 [56....-conversion1:amd64. (Reading database ... 189871 files and dire...sg-3) ... Setting up gnuplot-data (5....
1534 days ago
Install python-numpy python-scipy python-matplotlib on Ubuntu !
$MT:~/Downloads/chaos$ sudo apt-get install python-numpy python-...ecorator python-matplotlib-data python-olefile python-pil pyt...-matplotlib python-matplotlib-data python-numpy python-olefile p...verse amd64 python-matplotlib-data all 2.1.1-2ubuntu3 [3,774 kB]...ted package python-matplotlib-data. P...1534 days ago
Pack a perl program with their dependencies on Ubuntu !
#Follow steps to create your own exec...ibgetopt-argvfile-perl. (Reading database ... 193749 files and dire...e field that involves the design, analysis, and interpretation of data for studies in public health...structural variants in sequencing data using genome-wide local assembly....1504 days ago
Commands to install conda in Ubuntu !
jit@jit-HP-Pro-3335-MT:~/Downloads$ mkdir jittmp jit@jit-HP-Pro-3335-M...ITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BU SINESS IN....1.7-py37_0 ... installing: webencodings-0.5.1-py37_1 ... installing:...py37_0 ... installing: importlib_metadata-0.8...1504 days ago
- jit@jit-HP-Pro-3335-MT:~/Downloads/testDock$ sudo docker system df TYPE...--autoConTAMPR v0.1-- Citation - autoConTAMPR: Automatic Contingency Table Analysis of Minority Peak Ranks Licen...
1502 days ago
- (base) jit@jit-HP-Pro-3335-MT:~/Downloads/testDock$ docker build -t autocontampr . Sending build context to Docker daemon 9.024MB Step 1/16 : FROM ubuntu:14.04 --->...
1435 days ago
- #This method can be applied directly to FASTA or a FASTQ file, compressed or uncompressed files. Seqtk is a fast and lightweight tool for processing biological data (FA...
1395 days ago
Sequence Ids conversion files !
ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/ Name Size Date Modified ARCHIVE/ 02/01/2020, 05:30:00 ASN_...00 737 B 09/06/2011, 05:30:00 ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2go.gz ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/gen...1395 days ago
