SHAMAN: a user-friendly website for metataxonomic analysis from raw reads to statistical analysis
SHAMAN is a shiny application for differential analysis of metagenomic data (16S, 18S, 23S, 28S, ITS and WGS) including bioinformatics treatment of raw reads for targ...1368 days ago
RosettaAntibodyDesign (RAbD): A general framework for computational antibody design
RosettaAntibodyDesign (RAbD) is a generalized framework for the design of antibodies, in which a user can easily tailor the run to their project needs. The...1334 days ago
URMAP, an ultra-fast read mapper
...e difficult to map and may therefore pose an unrealistically easy challenge to read mappers and variant callers. More at https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7320720/1294 days ago
maftools : Summarize, Analyze and Visualize MAF Files
With advances in Cancer Genomics, Mutation Annotation Format (MAF) is being widely accepted and used to store somatic variants detected. The Cancer Gen...1240 days ago
IVA: accurate de novo assembly of RNA virus genomes
...: The software runs under Linux, has the GPLv3 licence and is freely available from http://sanger-pathogens.github.io/iva https://pubmed.ncbi.nlm.nih.gov/25725497/1058 days ago
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OGDRAW - Draw Organelle Genome Maps
OrganellarGenomeDRAW converts annotations in the GenBank or EMBL/ENA format into graphical maps. The input has to be a GenBank or E...954 days ago
ncbi-datasets-cli -- Quickstart: command line tools !
...Lines format to other formats. Conda download: https://anaconda.org/conda-forge/ncbi-datasets-cli Buld Download https://www.ncbi.nlm.nih.gov/datasets/builder/?tax_id=...891 days ago
Refseq viraal genome sequences !
List of all viruses on NCBI https://ftp.ncbi.nlm.nih.gov/refseq/release/viral/887 days ago
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