Software packages for next gen sequence analysis
...scription factor binding sites based on ChIP-Seq data. (C++) * SISSRs - Site Identification from Short Sequence Reads. BED file input. Raja Jothi @ NIH. Perl. **See also this thread...3254 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...or 1000 Genomes Project; Very popular *“The final command run TABLE_ANNOVAR, using dbSNP version 138, 1000 Genomes Project 2014 Oct version, NIH-NHLBI 6500 exome database ver...2920 days ago
Worldwide funding agencies to fund your bioinformatics research !!
Are you seeking funding for research or training in a particular area? Check out the following agencies ... National Science Foundation: For the love of scien...2949 days ago
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Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subsystems in the SEED database and provides detailed annotation and pathway analysis. Takes several h...2343 days ago
Computational resources for TE discovery and TE detection
...://www.plantgdb.org/prj/TE_nest/TE_nest.html TRANSPO http://alggen.lsi.upc.es/recerca/search/transpo/transpo.html TSDfinder http://www.ncbi.nlm.nih.gov/CBBresearch/Landsman/TSDf...2285 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of genetic material between two organisms” , is relatively common in prokaryotes and single-...861 days ago
Some useful Bioinformatics links
...ling with the data deluge https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4083407/...ractions. - PubMed - NCBI https://www.ncbi.nlm.nih.gov/pubmed/24185095 MAFFT ver...ltidimensional Omics Data https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3921174/...2253 days ago