NAViGaTOR: Network Analysis, Visualization and Graphing Toronto
NAViGaTOR – Network Analysis, Visualization, & Graphing TORonto...e system for scaleable visualizing and analyzing networks. The current version, NAV...bility, extends input/output options, brings new network views and analysis algorithms...2131 days ago
Mulan: Multiple-sequence local alignment and visualization for studying function and evolution
...n: Multiple-sequence local alignment and visualization for studying function and evolution Mulan (http://mulan.dcode.org/), a novel method and a network server for comparing multiple...2079 days ago
Deepbinner: a signal-level demultiplexer for Oxford Nanopore reads
Deepbinner is a tool for demultiplexing barcoded Oxford Nanopore sequencing reads. It does this with a deep convolutional neural network classifier, using many of...1984 days ago
visNetwork: an R package for network visualization, using vis.js javascript library
visNetwork is an R package for network visualization, using vis.js javascript library (http://vis...gs are welcome on github : https://github.com/datastorm-open/visNetwork. Features Based on ...1941 days ago
SiLiX: implements an ultra-efficient algorithm for the clustering of homologous sequences
...nks (single linkage) with alignment coverage constraints. SiLiX adopts a graph-theoretical framework to interpret similarity pairs as edges of a network. A very efficient algorithm,...1969 days ago
EGAD: Ultra-fast functional analysis of gene networks
...series of highly efficient tools to calculate functional properties in networks based on the guilt-by-associ...iction algorithm which is fully vectorized (neighbor_voting), allowing network characterization across even...1967 days ago
1935 days ago
Osprey: Network Visualization System
...tware platform for the visualization of complex biological interaction networks. Osprey builds data-rich gra...ere published in Breitkreutz, BJ., Stark, C., Tyers M. "Osprey: A Network Visualization System." Genome...1930 days ago
Patterns: a modeling tool dedicated to biological network modeling
It is designed to work with patterned data. Famous examples of problems related to patterned data are: recovering signals in networks after a stimulation (cascade network reverse engineering), analysing periodic signals.1743 days ago
StringTie Transcript assembly and quantification for RNA-Seq
StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts. It uses a novel network flow algorithm as well as an optional de novo&nb...1424 days ago