EGAD: Ultra-fast functional analysis of gene networks
...ending ‘Guilt-by-Association’ by Degree) package, we present a series of highly efficient tools to calculate functional properties in networks based on the guilt-by-associa...1971 days ago
1938 days ago
Osprey: Network Visualization System
Osprey is a software platform for the visualization of complex biological interaction networks. Osprey builds data-rich graphical representations from Gene Ontology (GO) anno...1934 days ago
Patterns: a modeling tool dedicated to biological network modeling
It is designed to work with patterned data. Famous examples of problems related to patterned data are: recovering signals in networks after a stimulation (cascade network reverse engineering), analysing periodic signals.1747 days ago
phyloXML: XML for evolutionary biology and comparative genomics
phyloXML (example) is an XML language designed to describe phylogenetic trees (or networks) and associated data. PhyloXML provides elements for commonly used features, s...1611 days ago
Machine learning training and courses in bioinformatics !
...robabilistic models (Markov models, Hidden Markov models, and Bayesian networks) for biological sequence anal...iology. Other machine learning techniques, such as Naive bayes, neural networks and SVMs will only be covered...1588 days ago
Deepbinner: a signal-level demultiplexer for Oxford Nanopore reads
Deepbinner is a tool for demultiplexing barcoded Oxford Nanopore sequencing reads. It does this with a deep convolutional neural network classifier, using many of the ar...1548 days ago
netGO: R-Shiny package for network-integrated pathway enrichment analysis
...ckage for network-integrated pathway enrichment analysis.netGO provides user-interactive visualization of enrichment analysis results and related networks. Currently, netGO supports a...1545 days ago
medaka: Sequence correction provided by ONT Research
medaka is a tool to create a consensus sequence from nanopore sequencing data. This task is performed using neural networks applied from a pileup of individual sequencing reads ag...1449 days ago
ShinyGO v0.61: Gene Ontology Enrichment Analysis + more
...61, Improve graphical visualization (thanks to reviewers). Interactive networks and much more. 5/20/2019: V....iagrams with your genes highlighted, hierarchical clustering trees and networks summarizing overlapping terms...1433 days ago