2489 days ago
Bandage: interactive visualization of de novo genome assemblies
...the graph. By displaying connections between contigs, Bandage presents new possibilities for analyzing&n...is implemented in C++ and supported on Linux, OS X and Windows. A full feature list and screenshots are avai...2351 days ago
2347 days ago
AliTV—interactive visualization of whole genome comparisons
AliTV, which provides interactive visualization of whole genome alignments. AliTV r...ignments or automatically generates alignments from the provided data. Optional feature annotations and phylo- geneti...2314 days ago
Alfred: BAM Statistics and Feature Counting
The easiest way to get Alfred is to download a statically linked binary from the Alfred github release page. Alternatively, you can build Alfred from source. Alfre...2301 days ago
PGAP-X: Extension on pan-genome analysis pipeline
PGAP-X is a microbial comparative genomic analysis platform with graphic interface....also supported to be further analyzed or visualized in PGAP-X. The workflow and feature snapshot in PGAP-X were shown...2301 days ago
bpRNA: large-scale automated annotation and analysis of RNA secondary structure
bpRNA, a novel annotation tool capable of parsing RNA structures, including complex...g with the positions, sequence, and flanking base pairs of each such structural feature. The bpRNA code is written i...2182 days ago
CGView - Circular Genome Viewer
CGView is a Java package for generating high quality, z...s of generating visual output suitable for the web. Feature information and rendering opt...genome browsing, and facilitating data sharing. The feature labels in maps can be hyperli...2153 days ago
P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing reads
P_RNA_scaffolder is a novel scaffolding tool using Pair-end RNA-seq to scaffold gen...nbsp;PEP_scaffolder ) for scaffolding genome sequences. The most important feature of this method is to improve...2075 days ago
Qualimap2: Evaluating next generation sequencing alignment data
Qualimap 2 is a platform-independent application written in Java and R that pr...itate the quality control of alignment sequencing data and its derivatives like feature counts. Supported types...2071 days ago