Results for "Next Generation Sequence Analysis"
Top-level pages
Genome Assembly Tools and Software - PART1 !!
...DNA Baser 4.36 – DNA Sequence Assembly & Analysis DNA Sequence Assembler is re...cs software for automatic DNA sequence assembly , DNA sequence analysis, contig editing, file format co...for analyzing and visualizing Next Generation Sequencing data, incorporat...2694 days ago
Source Code and Pseudo Code !!
An algorithm is a procedure for solving a problem in terms of the...ted. An algorithm is merely the sequence o...roblem. The steps are normally "sequence," "selection, " "iteration,"...or equal to ten Input the next grade Add the grade into the...e grade counter input the next gra...2667 days ago
Quick next generation sequencing (NGS) terms definition
fragment size: the Illumina WGS protocol generates paired-end reads from both ends of longer fragments. The len...Note that, by definition, the discordant read pairs signal potential SVs. The sequence...2531 days ago
Awesome perl frameworks, libraries and software - PART 1
...openresty - Obsolete 1st generation of OpenResty written mostly i...Def - Programming in the next paradigm -- your way houseabsolute...d collection of utilities for Next-Generation Sequencing (NGS) data analysis masukomi/jsonpath-perl ...2498 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
...m, resulting from a cladistic analysis, which depicts a hypothetical branching sequence of lineages leading to the taxa...her clade. repetitive DNA -- Sequences of DNA that are found to be...tage of the population in the next generation. sister group -- The two c...2470 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...orm abundances from reference sequences and RNA-seq data (k-mer based)...ariants directly from raw NGS sequence reads by counting unique k...GS reads using alignment-free sequence dissimilarity measures d2* an...omic assignment in metagenome analysis by exact k-mer search; L...2379 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in...e useful links: Single Cell RNAseq data analysis Tutorial A step-by-step workflow for low-level analysis of single-cell RNA-seq data...on and evaluation in single-cell RNA-seq analysis https://github.com/zji90/TSC...2359 days ago
- ...f applications, but no single analysis pipeline can be used in all c...e major steps in RNA-seq data analysis, including experimental desig...ernative splicing, functional analysis, gene fusion detection and eQ...ene and transcript expression analysis of RNA-seq experiments with T...
2359 days ago
Tools for bacterial whole genome annotation
...tailed annotation and pathway analysis. Takes several hours per geno...ctional profiling and pathway analysis of your genome(s)… whi...d inverted repeats, insertion sequences, transposons and other mobil...signs K numbers to the user's sequence data by BLAST searches, respe...2340 days ago
- There are several ways you can convert fastq to fasta sequences. Some methods are listed below...e of every 4 lines, you get the sequence header and sequence needed fo...fastq-fasta conversion seqret -sequence reads.fastq -outseq reads.fas.... [-r] = Rename sequence...
2314 days ago
