Results for "Next-Gen"
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HOMER: Software for motif discovery and next-gen sequencing analysis
This tutorial covers topics independently of HOMER, and represents knowledge which is important to know before diving head first into more advanced analysis tools such a...2933 days ago
- statistical analysis and visulization of functional profiles for genes and gene clustersBioconductor version: Release (3.3)This package implements methods to analyze and...
2882 days ago
- ...Mtools: Primer / Tutorial by Ethan Cerami, Ph.D.keywords: samtools, next-gen, next-generation, sequencing, bowtie, s...ge for bcftools.AboutSAMtools is a popular open-source tool used in next-generation sequence analysis. Thi...
2875 days ago
GeneProf: analysis of high-throughput sequencing experiment
...high-throughput sequencing platforms (RNA-seq and ChIP-seq; "Next-Generation Sequencing" or NGS): Next-gen analysis for next-gen data!...rovides a comprehensive resource of fully analyzed next-generation sequencing data. Exper...2498 days ago
simNGS and simLibrary – Software for Simulating Next-Gen Sequencing Data
simNGS is software for simulating observations from Illumina sequencing machines using the statistical models behind the AYB base-calling software. By default, observati...2352 days ago
kWIP: The k-mer weighted inner product, a de novo estimator of genetic similarity
...netic dissimilarity between samples without any reference genome, and without assembling one. De novo estimates of genetic relatedness from next-gen sequencing data https://kwip....2170 days ago
SISRS: Site Identification from Short Read Sequences
Next-gen sequence data such as Illumina HiSeq reads. Data must be sorted into folders by taxon (e.g. species or genus). Paired reads in fastq format must be specified by _R1 and _R2 in the (otherwise identical) filenames. Paired and unpaired reads must have a fastq file extension.1987 days ago
- Supports Illumina, 454, other Next-Gen and Sanger Reads and allows mixtures of these read types Consed includes BamScape which can view bam files with unlimited numbers of reads. Ba...
1551 days ago
