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Comment on "Short-read assembly using Spades !"
...is the process of constructing a genome sequence from a large numbe...ing reads. SPAdes (St. Petersburg genome assembler) is a popular sof...aw reads are of high quality and do not contain sequencing errors or...the directory where the assembled genome will be saved, "forward_rea...459 days ago
- ...hetic reads based on sequencing technologies such as Illumina, SOLiD...ree download. wgsim: wgsim is another widely used short read si...reads with different sequencing technologies, including Illumina, Io...tion and the type of sequencing technology used in the study....
459 days ago
Comment on "Calculate the significance of the difference between two trends"
Useful reading material https://statsandr.com/blog/anova-in-r/462 days ago
Comment on "Short-read assembly using Spades !"
SPAdes (St. Petersburg genome assembler) is a popular tool fo...from Illumina, IonTorrent, PacBio, and Oxford Nanopore sequencing platforms. Her...can view the contigs using a text editor or a genome browser. SPAdes also pro...465 days ago
Comment on "Tools for Sequence translation !"
...sponding protein sequence. This is an important step in the analysis of genomic and transcriptomic data. T...is is a command-line tool that can translate nucleotide sequences into amino acid sequences. It supports s...465 days ago
Comment on "Tools for Differential expression analysis"
...sis is a widely used technique in genomics and transcriptomics resea...RNA-Seq data. It uses a negative binomial distribution to model the...fferential expression. edgeR: Another R package that is commonl...analysis of RNA-Seq data. It uses a non-parametric method based on t...465 days ago
Comment on "Tools for RNA classification"
...roach to identify RNA homologs. It is particularly useful for identifying non-coding RNA (ncRNA) sequences...molecules. RNAmmer: RNAmmer is a tool for predicting rRNA genes in genomic sequences. It uses a combi...465 days ago
Comment on "Basic command-line to run BLAST"
BLAST compares a query sequence to a database of known sequences and identifies the most similar matches. This is useful for identifying the function of a newly discovered gene or f...465 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
To install BioPerl on a macOS system, you can follow these steps: Open the Terminal app on your macOS system. Install Homebrew if you haven't alre...466 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
Genome synteny analysis is the comparison of the genomic structure and gene content...gical interest. Obtain the genome sequences: Download the gen...thologous genes between the genomes using tools such as OrthoF...ng them to other sources of genomic data, such as gene express...467 days ago
