Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
...on-sexual movement of genetic material between two organisms” , is relatively common in prokaryotes and single-celled eukaryotes, but a number of factors combine to make it...864 days ago
Tools to Predict the Impact of Missense Variants !
...ants for further experimental investigation is a key challenge in current sequencing studies for exploring complex and Mendelian diseases. A large number of in silico tools...2217 days ago
LINKS scaffolder bloomfilter setting !
...er pairs (default -o 0, optional) -e error (%) allowed on -d distance e.g. -e 0.1 == distance +/- 10% (default -e 0.1, optional) -l minimum number of links (k-mer pairs) to com...2165 days ago
Understanding BLASTn output format 6 !
...s 4. length alignment length 5. mismatch number of mismatches 6. gapopen number of gap openings 7. qs...ent lengthpident Percentage of identical matchesnident Number of identical matchesmismatch ...2153 days ago
Interview Puzzles for Bioinformatician !
...zle Crossing the Bridge Puzzle Will you accept the bet? The Puzzle of 100 Hats Man fell in Well Puzzle Minimum Number of Weigths One Bulb with 3 Switches Find the minimum number of aircraft Burning ropes to...2133 days ago
List of non-commercial NGS genotype-calling software
...atistical methods both improve and quantify the considerable uncertainty associated with genotype calling, and will especially benefit the growing number of studies using low- to medi...2110 days ago
Parallel Processing with Perl !
...it for you very efficiently. One really useful module is Parallel::ForkManager. You can use Parallel::ForkManager to manage the number of forks you want to generate (number of processors you want to use...2094 days ago
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Steps to find all the repeats in the genome !
...ed "genome.fasta". ./RepeatMasker -pa <number_of_processors> -nolow -nor...g placeholders with appropriate values: <number_of_processors>: The number...eral output files, including .log.txt and .copynumber.csv, which contain quantitati...263 days ago