Results for "Number"
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Comment on "Benchmarking Perl Module !"
...e to run the benchmark. The timethese function takes two arguments: the number of iterations to run and a re...ethese function will output the results of the benchmark, including the number of iterations, the total time...418 days ago
Comment on "Short-read assembly using Spades !"
Short-read assembly is the process of constructing a genome sequence from a large number of short sequencing reads. SPAdes (St. Petersburg genome assembler) is a p...418 days ago
Comment on "CovCal: Coverage / Read Count Calculator"
Sequencing coverage is defined as the average number of reads that covers each base of the reference ge...coverage G is the length of the genome L is the read length N is the number of reads For example, if y...585 days ago
Comment on "Far Manager Commands and Links !"
We press the combination Alt keys+ F1 or Alt + F2, in the menu that opens, select NetBox, it is under the number 2. Now we need to create a connection to our server. Let's say y...942 days ago
Comment on "Calling variants in non-diploid systems"
FreeBayes is widely used for calling variants in diploid systems. However, it can also be used for calling variants in pooled samples where the number of samples is not known. This is...1046 days ago
Comment on "URMAP, an ultra-fast read mapper"
.../dev/stdout or "-" (minus sign) if you want to pipe output to another program. The -threads option specifies the number of processor threads to use for mapping. Default is the number of CPU cores or 10, whichever...1286 days ago
Comment on "Sibelia: A comparative genomics tool"
...Ds, sizes and descriptions. IDs are just index numbers of sequences (in the same o...es of a synteny block. Copies having the same number in the "tag" field (last colu..._file> Where "run.stage" contains single number "0". Fine tuning ========...1287 days ago
- ...-end reads. The default running mode is paired-end and requires an even number of FASTQ files represented as...lag, as well as the -l and -s options, and list any number of FASTQ files, e.g kall...
1363 days ago
Comment on "Extract fasta sequence from a multifasta file with fasta header Ids"
perl -ne 'if(/^>(\S+)/){$c=grep{/^$1$/}qw(id1 id2)}print if $c' fasta.file If you have a large number of sequences that you want to extract, then you most likely have the sequence...1912 days ago
- ...-d <assembly-directory> \ genomeSize=<number>[g|m|k] \ [other-options]...d reads. For lower quality reads, use a higher number. The defaults are 0.300 for P...mits; Canu will do that for you. minReadLength=number - Ignore reads shorter than '...
2101 days ago
