Flye: Fast and accurate de novo assembler for single molecule sequencing reads
...rom small bacterial projects to large mammalian-scale assemblies. The package represents a complete pipeline: it takes raw PB / ONT reads as input and outputs polished contigs. Flye also includes a spec...1762 days ago
1593 days ago
medaka: Sequence correction provided by ONT Research
medaka is a tool to create a consensus sequence from nanopore sequencing data. This task is performed using neural networks applied from a pileup of individual s...1445 days ago
SneakySnake: A Fast and Accurate Universal Genome Pre-Alignment Filter for CPUs, GPUs, and FPGAs
...hitectures. SneakySnake greatly (by more than two orders of magnitude) expedites sequence alignment calculation for both short (Illumina) and long (ONT and PacBio) reads. Described...1229 days ago
873 days ago
Severus: a somatic structural variation (SV) caller for long reads
...somatic structural variation (SV) caller for long reads (both PacBio and ONT). It is designed for matching...ngements. If you use Severus, please cite https://www.medrxiv.org/content/10.1101/2024.03.22.2430475...32 days ago