Results for "OS"
Users
About me: ...omain of bioinformatics and computational biology, I mainly focus on chromosomal breakpoint and amniotes e...@ https://github.com/jnarayan81 PhD thesis @ British Library https://ethos.bl.uk/OrderDetails.do;jsessio...Interests: Chromosomal Breakpoints7 days ago
3914 days ago
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Blogs
Five unique traits of effective computational biologist
...nd effective biological programmer, you need to possess a combination of traits t...computer programmer and avoid biology. I can almost guarantee that if you are on...h biologist The computational biologist spends most of the time in from of compu...3947 days ago
How to install Perl modules manually, using CPAN command, and other quick ways
...(default version)libbiojava3-java - Java API to biological data and applications (default version)python-biopython-sql - Biopython support for the BioSQL database schemalibbtlib-per...3947 days ago
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Bookmarks
Well designed regular expression cheat sheet
In our computational biology work, we mostly play with DNA or AA string. For string based programming work this regular expression cheat sheet is really helpful. Keep it handy.3947 days ago
Online Courses for biology beginners
Most of the time we face some biological problems while analysing our data computationally. This bookmark is being created to provide list of all free online courses at one place. If you know any other good online cource resources to learn biology please let me know.3941 days ago
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Files
Bioinformatics approach to Boar Taint
...as a complex genetic trait called boar taint.Androstenone and Skatole in the...at primarily cause boar taint. Metabolism of androstenone and sex steroids share...then used for constructing SNPs haplotypes in close linkage disequilibrium with...3786 days ago
Master Thesis: Trans-membrane topology prediction through Markov based decoders
...requires the correct assignment of the buried and lipid-exposed faces of the TM domains. Results: In a cross validated test on single seq...r Markov model (MM) with an architecture that corresponds closely to the biological systems....3941 days ago
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Discussion topics
- The key to finding a solution is to notice that most genomicsequences differ by very little. It may well be that the number of complete genome sequences being stored is increas...
3917 days ago
Want to Know which genome assembler rule the world ?
...rnal.com/content/2/1/10/abstract http://blogs.nature.com/news/2013/07/genome-assembly-contest-prompts-soul-searching.html http://assemblathon.org/post/44431915644/feedback-and-ana...3917 days ago
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Pages
Bio++ : C Language libraries for your biological need
...lopment of large programs. Perhaps most importantly, it supports obj...ty with C to as large an extent as possible, and retain its spirit a...del description for proteins, with possibility to estimate equilibri...N. Detecting groups of coevolving positions in a molecule: a cluste...3944 days ago
- ...to, who wished to create a new language that balanced functional programming with imperative programming Ruby is a dynamic, reflective, general purpose object-oriented programming...
3944 days ago
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Top-level pages
- ..." - from the Bioinformatics Glossary edited by Charles E. Kahn...l or health data, including those to acquire, store, organize,...ork practice in the average bioscience laboratory where the co...ns are lens crystalline and phosphoglucose isomerase. Currentl...
3944 days ago
- ...f high-throughput DNA sequencing, so called the “high-throughput next generation sequencing” (HT-NGS). The decreasing genome sequencing cost and desire to explore and un...
3944 days ago
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Wire posts
News
- The ongoing genomic research in USA contributed $31 billion to the U.S. gross national product and helped support 152,000 jobs. Reference: http://www.unitedformedicalresearch.com/wp-content/uploads/2013/06/The-Impact-of-Genomics-on-the-US-Economy.pdf
3949 days ago
- ...ass for people with a little bit of programming experience who want to learn Python. The google python class includes written materials, lecture videos, and lots of code exercises t...
3948 days ago
- +135 more News
Opportunity posts
- ...omputer Science, the DFG Research Training Group GRK 1907 “Role-based Software Infrastructures for continuous-context-sensitive Systems” offers the positions of 6 PhD Students (E 13...
3944 days ago
- ...3 Applications/Biodata/CV are invited for 03 positions of Research Associate(s...e on the e-mail ID(s) as mentioned against each position positively by 05.08.2013...ta/CV to be sent: ngs@ihbt.res.in 2. Name of Position: Research Associate (Pla...
3941 days ago
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ResearchLabs posts
- ...effectively use of vast and diverse amounts of biomedical knowledge. We are particularly interested in understanding how the response to chemical exposure is modulated by genetic an...
3945 days ago
- ...nization in living cells, with an emphasis on mitosis. We develop in-vitro assays, quantitative image analysis and cytosim, a computer simulation to s...f microtubules in fission yeast and the spindle positionning in C. elegans. We a...
3945 days ago
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Fun
Perl Poem: Parse it in both Perl and English!
...available as misc/poetry.ps on CPAN.) Besides being the most prolific Perl poet, Sharon is also the most widely published, having had...idden), open (locks, doors), tell secrets;do not, I-beg-you, close them, yet. accept (yourself...3915 days ago
What a bioinformatician always dream for ???
...l :P A girl/boy with lesser E-values and higher compatibility score. Horoscope Match should be significa...t (not less that 18). Laptops with broadband connections. Licence to almost all genomics and proteomics...3842 days ago
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Video
Personalised Medicine - Animation
Two animated case scenarios set now and in the future. These highlight potential differences in the way patients are treated now, and how they might be treated as healthcare becomes more tailored.3901 days ago
Bioinformatics -- Understanding of living systems through information science
...bioinformatics research, what we do is utilize those genome information to invest...called rearrangements, such as inversions, transpositions, and duplications, occu...analyze large genomes, by comparing them with those of other organisms. The Sak...3914 days ago
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Bio-Scripts
Count the frequency of base G in a given DNA sequence
...; my $DNA = "GATTACACAT"; #initialize $countG and $currentPos my $countG = 0; my $currentPos = 0; #calculate the length...if it is the base G #if 'yes' increment $countG while($currentPos < $DNAlength){ my $base = s...2914 days ago
BioPerl to convert between sequence formats from Fasta to Genbank
#!/usr/local/bin/perl -w # Sequence formats to choose: Fasta, EMBL. GenBank, Swissprot, PIR and GCG use Bio::SeqIO; $inFile = "BRCA2.fa"; $in = Bio::SeqIO->newFh('-file...2913 days ago
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Polls
Which of the following programming language is best for a bioinformatics beginner?
I will be doing NGS in the course of my research work and I will like to learn a programming language which is compatible with most bioinformatics tools or software. I basically wan...3527 days ago
Which math/statistics programming language/application do you most frequently use in bioinformatics?
I'm doing a bit more statistical analysis on some bioinformatics things lately, and I'm curious if there are any programming languages that are particularly good for this NGS computation. What suggestions do you guys have? Are there any languages that have exceptionally good libraries?3523 days ago
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Tryst
Interview with a bioinformatician series ...
...to get their views on various aspects of bioinformatics research. Hopefully these answers will prove useful to others in the field, especially to those who are just starting their...3413 days ago
Tryst with a Bioinformatician # Dr Altan Kara
...thers in the field, especially to those who are just starting their...iting to be enlightened and it's impossible to bring solutions to th...roach, and to develop an early diagnosis and scanning kit based on t...he one thing which I will miss the most. If there will be bioin...2359 days ago
Groups
...tics as a field of study, is at an interesting crossroads. As an academic branch of learning, bioinformatics remains mostly what it always was — a cro...iology. But bioinformatics as a money-making proposition has different criteria f...3949 days ago
...Extraction and Reporting Language) is a family of high-level, general-purpose, interpreted, dynamic progra...ges. Perl was originally developed by Larry Wall in 1987 as a general-purpose Unix scripting language to m...3949 days ago
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Tags
List of bioinformatics open source projects/software.
Open source software is software that can be freely used, changed, and shared (in modified or unmodified form) by anyone. Open source software is made by many people, and distributed under licenses that comply with the Open Source Definition.The Open Source Initiative (OSI) is a global non-profit...Tags: Bioinformatics, Tools, OS, Open Source
3753 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
List of generic simulation software/tools/resource with brief description and homepage ALF A Simulation Framework for Genome Evolution http://www.cbrg.ethz.ch/alfBayesian Serial SimCoal Bayesian Serial SimCoal, (BayeSSC) is a modification of SIMCOAL 1.0, a program written by Laurent Excoffier,...Tags: Bioinformatics, Tools, OS, Open Source, Simulation, Software, Tools, Resources
3734 days ago
Comments
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
...ou install packages via cpan it will also print the folder perl is installing the package into. If you want to be extra-sure, you can also install most Perl packages via conda. Rep...413 days ago
Comment on "Short-read assembly using Spades !"
...sembly: Install SPAdes: SPAdes can be downloaded from the official website (http://cab.spbu.ru/software/spades/). It is available for Linux, macOS, and Windows operating system...417 days ago
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