Run bash script in Perl program !
...y slightly from one another, making it difficult for Perl beginners to choose between them. 1. IP...script as input and generates a comparable Perl script as the output. Suppose, you want to execute the fol...657 days ago
Ancient whole genome duplication (WGD) detection tools !
...-synonymous site. At present, some people have posted articles about the analysi...yML/FastTreei-ADHoRe But the good news is that most of the software it depends o...s an example. The genome is 8-ploid with 32 chromosomes (2n = 4x8 = 32) Download...1176 days ago
List of useful machine / ai learning resources !
ML cheatsheet ! https://github.com/remicnrd/ml_cheatsheet Visual AI / ML https://setosa.io/ev/ Simple and efficient tools for predictive data analysis https://scikit-learn.org/stable/1152 days ago
Innovative blog and portfolio website!
...f useful pages to mativate you https://brittanychiang.com/ https://ashutosh1919.github.io/#/ https://da.../ecoevogeno.org/ https://colauttilab.github.io/ https://github.com/ashutosh1919/masterPortfolio F...1068 days ago
Bioinformatics tools for telomere to telomere assembly !
● Merfin – k-mer-based assembly and variant calling evaluation for improved consensus accuracy (Arang Rhie)● PanGenie – algorithm that...1012 days ago
Levenshtein and Damerau-Levenshtein distance !
...an extension to Levenshtein Distance, allowing one extra operation: Transposition of two adjacent cha...TSAR to STAR Damerau-Levenshtein distance = 1 (Switching S and T positions cost only one operation...970 days ago
Illumina based assembly pipeline steps !
...(FastQC) Adapter trimming (fastp) Removal of host reads (Kraken 2; optional)...s) Genome-wide and amplicon coverage QC plots (mosdepth) Choice of multiple var...tracks (ASCIIGenome) Intersect variants across callers (BCFTools) De nov...897 days ago
Useful Bioinformatics Analysis Tools !
...assification of Metagenomes Using k-mers, PLOS ONE, 2015; 10(4):1&ndash...k-mer counter. • Kokot, M., Długosz, M., Deorowicz, S., KMC...• Deorowicz, S., Gudys, A., Dlugosz, M., Kokot, M., Danek, A.,&n...884 days ago
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List of comparative genomics resources !
...ivestock QTL database tool set for positional QTL information mining...RE -- a multi-organism system for cross-species data comparison and...parative biometric analysis of chromosomes of different organisms....t Explore orthologous relations across 352 complete genomes. O...698 days ago