Ancient whole genome duplication (WGD) detection tools !
There are two methods for ancient WGD det...zhiyang2 012/WGDdetectorhttps://bmcbioinformatics.biomedcentral.com/articles/10...:// github.com/arzwa/wgdhttps://bmcbioinformatics.biomedcentral.com/articles/10...e, you need to register at http:// bioinformatics.psb.ugent.be /webtools/i-adho...1155 days ago
Frequently used bioinformatics tools for viral genome analysis !
...Keane JA, Kellam P, Otto TD. Bioinformatics. 2015 Jul 15;31(14):2374-6. doi: 10.1093/bioinformatics/btv120. Epub 2015 Feb 28. Ad...z, A. & Grabowski, S. BMC Bioinformatics 14, 160 (2013). Kraken: Krak...t and SAMtools. Li, H. et al. Bioinformatics 25, 2078-9 (2009). Trimmomat...1047 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming (fastp) Removal of host reads (Kraken 2; optional) Variant calling Read alignment (B...877 days ago
Useful Bioinformatics Analysis Tools !
...pression of FASTQ files, Bioinformatics, 2014; 30(15):2213&ndash...for raw sequencing data, Bioinformatics, 2018; 34(16):2748&ndash...ating k -mer statistics, Bioinformatics, 2017; 33(17):2759&ndash...of DNA sequencing data, Bioinformatics, 2019; 35(12):2043&ndash...863 days ago
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List of comparative genomics resources !
...uences from the Mammalia class. MicrobesOnline -- Prokaryotic Genome Databas...Poster and Teaching Resource An interactive online poster presentation on the Ma...cBARBEL -- Catfish Breeder and Researcher Bioinformatics Entry Location Find informat...677 days ago
Online resources on must-read papers in evolutionary biology, for a literature club
1. *Nick Barton:* - The textbook "Evolution" by Nick Barton, with resources for exploring the literature: Barton, N. H., Briggs, D. E. G., Eisen, J. A., Gold...677 days ago
Finding a mimicry game for teaching on-line and mentioned general resources
Mimicry and other resources Mimicry games: Great Heliconius game: http://heliconius.org/evolving_butterflies/...omosomes: https://projects.ncsu.edu/cals/gn/ex/y-chrom.html A professional online package...677 days ago
Useful link to teach evolution !
Mimicry and other resources Mimicry games: Great Heliconius game: http://heliconius.org/evolving_butterflies/...omosomes: https://projects.ncsu.edu/cals/gn/ex/y-chrom.html A professional online package...577 days ago
Interesting Bioinformatics Resources !
1. a reproducible workflow. https://www.youtube.com/watch?v=s3JldKoA0zw This two minute video will change your mind on reproducible research 2. Parallel se...541 days ago