Commercial and public next-gen-seq (NGS) software
...by Gabor Marth at Washington University. This version is specifically optimized for the analysis of large num...aphical viewer, but again for its own alignment format.SSAHA has been optimized for short-reads, too. But yes...3511 days ago
Software packages for next gen sequence analysis
...ayesShort - A re-incarnation of the PolyBayes SNP discovery tool developed by Gabor Marth at Washington University. This version is specifically optimized for the analysis of large num...3234 days ago
Awesome perl frameworks, libraries and software - PART 1
...d performance and stability. kraih/mojo - Mojolicious - Perl real-time web framework petdance/ack2 - ack 2.0 is a greplike tool optimized for programmers searching lar...2481 days ago
Tools to Predict the Impact of Missense Variants !
...d Annotation Dependent Depletion, LRT, phyloP, and GERP++, as well as optimized methods of combining tool sco...nded tools are most accurate among all tools, and may even outperform optimized combinations of tools. Follo...2195 days ago
Bioinformatics tools for genome assembly !
...e Bruijn graphs. Velvet: Another de Bruijn graph-based assembler optimized for short-read sequencing dat...logies, such as Illumina and PacBio. Canu: A long-read assembler optimized for PacBio and Oxford Nanopor...278 days ago