Comment on "URMAP, an ultra-fast read mapper"
map command Maps unpaired reads to a reference genome. The reference genome is stored as a UFI file created by the make_ufi command. The original FASTA file for the reference is...1302 days ago
Comment on "Sibelia: A comparative genomics tool"
...by "gaga": 1st pair: ... act gaga ggc ... 2nd pair: ... act gaga ggc ... "Sibelia" keeps track of all changes so it is able to locate original locations of the synteny blo...1303 days ago
Comment on "Basic command-line to run BLAST"
Original paper https://www.sciencedirect.com/science/article/pii/S00222836058036021313 days ago
Comment on "REAPR: a universal tool for genome assembly evaluation"
...here) but for now we’ll stick to looking at the split output file, called 04.break.broken_assembly.fa. Use this file together with the original assembly to generate a quast...1355 days ago
Comment on "Computational Proteomics : Lets remember the basics"
One intersting periodic table here https://image-store.slidesharecdn.com/4d4490d7-6c08-4b54-be7e-bdd048182bc3-original.png2709 days ago
Comment on "Next generation sequencing in R or bioconductor environment"
R package SPP for chip-seq analysis. It can read quite a few aligner's output file. Here is the original package tutorial. http://compbio.med.harvard.edu/Supplements/ChIP-seq/tutorial....3641 days ago
Comment on "Bioinformatics Algorithm Demonstrations and Tutorials"
Original paper of Basic local alignment search tool algorithms http://www.cmu.edu/bio/education/courses/03510/LectureNotes/Altschul1990.pdf3842 days ago