2263 days ago
Estimate Genome Size with Jellyfish and R
jellyfish count -t 8 -C -m 19 -s 5G -o 19mer_out --min-qual-char=? /common/Tutorial/Genome_estimation/sample_read_1.fastq /common/Tutorial/Genome_estimation/sample_rea...2245 days ago
2126 days ago
Installing ggplot2 and its dependencies on Ubuntu !
jit@jit-HP-Pro-3335-MT:~/Downloads/MitoHunter/minidot/bin$ sudo R [sudo] passwo...rror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utf8lite/src/graph.c -o utf8lite/src/graph.o gcc -std=gnu99 -I/usr/shar...1549 days ago
Pack a perl program with their dependencies on Ubuntu !
#Follow steps to create your own executable ./web jit@ji...uenceTubeMapsdisplaysmultiplegenomicsequencestubemapgraphmap github.com - A Jav...pt module for the visualization of genomic sequence graphs. It automatically generates...1510 days ago
1441 days ago
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989 days ago
Tadpole is 250x faster than SPADes assembler !
...ot= Write a contigs connectivity graph (partially implemented) dump=...tigs=f Explore the contig connectivity graph. (partially implemented) Pro...y are very slow for large metagenomes. Overlap parameters (for overlapping paired-end reads only):...975 days ago
824 days ago