Results for "PDB"
Blogs
List of motif discovery tools !
...structural motif A server to predict protein active site residues. PDBSite -- a database of the 3D s...uctural and functional information on the protein functional sites. PDBSiteScan -- A program for sear...1991 days ago
Bookmarks
- ...Downloader has a built-in repository containing the settings for common bioinformatics file-synchronization needs, including the Protein Data Bank (PDB) and National Center for Biot...
2624 days ago
eQuant : energy-based quality assessment of protein
...utilizes a coarse-grained energy model. The overall quality is calculated as well as the reliability of individual residues. You can submit single PDB files or archives containing...2504 days ago
- +1 more Bookmarks
Pages
BioRuby :Ruby packages for biologist
...other languages because of Ruby's extremely high descriptive power. Classes for Multiple alignment (Bio::Alignment), Gene Ontology(Bio::GO), PDB (Bio::PDB), FANTOM database(Bio::FANTOM...3945 days ago
Top-level pages
- ...estimated that membrane receptors form 50 % of all drug targets in pharmacological research. However, membrane proteins are underrepresented in the PDB structure database. Since mem...
3945 days ago
List of In-silico Binding Site Prediction Tools
...e used for all structures in the dataset. PDBeMotif: http://www.ebi.ac.uk/pdbe-site/pdbemotif/ is an extrem...e of known ligand binding sites within the PDB which is navigable by PDB ide...tein. We have tested the algorithm against PDBbind, a large curated set of 1...3742 days ago
- +1 more Top-level pages
Wire posts
News
- RCSB PDB Sept'13 Release offers following new features: - New tools to search for drug...mprovements when performing sequence searches. Reference http://www.rcsb.org/pdb/static.do?p=general_informati...
3893 days ago
- .../mutabind/index.fcgi/ MutaBind guides you through this process, step by step, starting with selecting a protein complex and inputting PDB code or uploading PDB files. You can also retrieve...
2888 days ago
- +2 more News
Fun
Bioinformatician become producer/director !!!
...arah Hit Tera Ligand Chal Gaya Har Din Jo Modeling Karega Genbank Ke Us Paar Proteomics Koi Khel Nahi Jish Desh Mein Day Hoff Rehta Hai PDB Ek Numbari Structure Dus Numb...3917 days ago
Bio-Scripts
Command line to download blast database / protein
...ftp.ncbi.nlm.nih.gov/blast/db/ # Database detail / description nr.*tar.gz | Non-redundant protein sequences from GenPept, Swissprot, PIR, PDF, PDB, and NCBI RefSeq #First ru...941 days ago
Downloading mmseqs databases !
...Nucleotide - https://ftp.ncbi.nlm.nih.gov/blast/db/FASTA - PDB Aminoacid - https://www.rcsb.org - PDB70 Profile...940 days ago
Tags
- BioDownloader is a program for downloading and/or updating files from ftp/http servers. The program has unique features that are specifically designed to deal with bioinformatics data files and servers: optimized to work with vast amount of data and very large file sets (~ 10,000 - 100,000). ...
Tags: Bioinformatics, dunbrack, BioDownloader, NCBI, PDB, Database
2624 days ago
