List of motif discovery tools !
...structural motif A server to predict protein active site residues. PDBSite -- a database of the 3D s...uctural and functional information on the protein functional sites. PDBSiteScan -- A program for sear...1992 days ago
2625 days ago
eQuant : energy-based quality assessment of protein
...utilizes a coarse-grained energy model. The overall quality is calculated as well as the reliability of individual residues. You can submit single PDB files or archives containing...2506 days ago
BioRuby :Ruby packages for biologist
...other languages because of Ruby's extremely high descriptive power. Classes for Multiple alignment (Bio::Alignment), Gene Ontology(Bio::GO), PDB (Bio::PDB), FANTOM database(Bio::FANTOM...3946 days ago
3946 days ago
List of In-silico Binding Site Prediction Tools
...e used for all structures in the dataset. PDBeMotif: http://www.ebi.ac.uk/pdbe-site/pdbemotif/ is an extrem...e of known ligand binding sites within the PDB which is navigable by PDB ide...tein. We have tested the algorithm against PDBbind, a large curated set of 1...3743 days ago
3894 days ago
2889 days ago
Bioinformatician become producer/director !!!
...arah Hit Tera Ligand Chal Gaya Har Din Jo Modeling Karega Genbank Ke Us Paar Proteomics Koi Khel Nahi Jish Desh Mein Day Hoff Rehta Hai PDB Ek Numbari Structure Dus Numb...3918 days ago
Command line to download blast database / protein
...ftp.ncbi.nlm.nih.gov/blast/db/ # Database detail / description nr.*tar.gz | Non-redundant protein sequences from GenPept, Swissprot, PIR, PDF, PDB, and NCBI RefSeq #First ru...942 days ago
Downloading mmseqs databases !
...Nucleotide - https://ftp.ncbi.nlm.nih.gov/blast/db/FASTA - PDB Aminoacid - https://www.rcsb.org - PDB70 Profile...941 days ago
Tags: PDB, RCSB, Protein, New Release
3894 days ago