Results for "PU"
Bio-Scripts
Install BLAST in Ubuntu/Linux and Window !
...nstead http://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.7.1/ncbi-blast-2.7.1+-win64.exe #Run this installer using the defaults, it should put BLAST under C:\Program Files...1139 days ago
Read lines from input file – print lines that match a regular expression
#!/usr/bin/perl use strict; use warnings; my $line; #read the line-by-line for each line ask if it matches the regex print it if it matches while($line = )...2909 days ago
Check if your coputer ready to use BioPerl
#!/usr/bin/perl use strict; use warnings; #bioperl example code use strict; use warnings; #make the bioperl module (class) accessible to your program use Bio::Seq; print"ok - ready to use Bio::Seq";2909 days ago
- ...rectory of sequences $myDir = "/home/anjana/seqs"; # Output directory (relative to $myDir or full path) $outputDir = "OutDir"; # Path to...s per their need print "$patFile \t$seqFile \t $outputDir/$outFile\n"; } }
2908 days ago
Retrieve NCBI GenBank records with a range of accession numbers
...( query => undef, outputFile => undef, database...=> \$param{query}, 'o|output_file=s' => \$param{outputFil...} ) ) or !( defined( $param{outputFile} ) ) or !( defined(...open( my $OUTFILE, ">" . $param{outputFile} ) or die("Erro...2908 days ago
A multilayer perceptron (MLP) neural network in Perl
...########################### #Tanh hidden neurons #Linear output neuron #To include an input bias create an #extra input...tNum; my $errThisPat; my $outPred; my $RMSerror; my @trainInputs; my @trainOutput; # t...2908 days ago
Extract a random sequence from a file
#!/usr/local/bin/perl -w use strict; use warnings; use autodie; use List::Util qw/ shuffle /; my $outputfile = 'randomoutput.txt'; open my $in_fh, '', $outputfile; my $size...2907 days ago
Blast result parser with Perl and Bioperl
...dong Bai # It may be freely distributed under GNU General Public License. # This script will parse a NCBI blastx output file and output the top N hi...nce print OUT $result->query_length; # output "no hits found" if there is...2907 days ago
Find and replace ambiguous characters in fasta file with Perl and Bioperl
...marged. If no \n". "argument is given, it will take STDIN as the input\n"; our($opt_h, $opt_m);...e, -format => $format); while (my $seq = $seqio_obj->next_seq()) { push(@seqArr, $seq); } }...2907 days ago
Count GC Content in nucleotide sequence with Perl
...; } unless ( open(OUT, ">$out_file") ) { print "Couldn't create $out_file\n"; exit; } print "Parameters:\nfasta file = $fasta_file\noutput file = $out_file\n\n"; #---...2898 days ago
