Source Code and Pseudo Code !!
...t the programming effort. It is the purpose of pseudocode to elabora...is less than or equal to ten Input the next grade Add the...set ascending cntr to 1 putchar first char of string to...nclude the functions name, the main purpose of the function, paramet...2663 days ago
Perl Special Vars Quick Reference
...he source code to Unicode. ${^OPEN} Internal use: \0 separated Input / Output layer information. ${^U...ading <> @ARGV List of command line args. ARGVOUT Output filehandle for -i switch...2649 days ago
Awesome perl frameworks, libraries and software - PART 1
...possible in one go shirkdog/pulledpork - Pulled Pork fo...nbsp;- Package to assist with publishing a web site using MMD...l reports. plicease/FFI-Platypus - Write Perl bindings t...le modbus/TCP client write in pure Perl. semifor/net-twitter-...2494 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
...from two different ancestors. ancestor -- Any organism, population, or species from which some other organism, population, or species is descende...ion -- Process which favors one feature of organisms in a population over another feature fo...2467 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...uence database Software (C++) https://ccb.jhu.edu/software/kraken/ LMAT Assignment of taxonomic labels to reads by k-mers searches in precomputed database Software (C++/Py...2376 days ago
2356 days ago
Single Cell RNAseq data analysis tutorial !!
...the average expression level for each gene across a large population of input cells Useful for comparativ...NA-seq data analyses https://github.com/nghiavtr/BPSC Sincera: A Computational Pipeline for Single C...2355 days ago
Edit distance application in bioinformatics !
There are other popular measures of edit distance, which are calcu...ext::Levenshtein::Damerau defaults to using a pure perl implementation, but if...d on edit distance. Text::Fuzzy::PP is a pure perl implementation of the...2345 days ago
Converting BLAST output into CSV
...do something with all this BLAST output. Generally, that’s the...grams that run on UNIX, the text output is in some specific format....n you are interested in from the output. Let’s conclude this...st-to-csv.py out.txt This outputs a spread-sheet like list of...2342 days ago
Tools for bacterial whole genome annotation
...e Automatic Annotation Pipeline (PGAAP; see Pubmed Article) developed in 200...single genomes. The extended annotation assigns putative functions to many genes...having evidence-based quality values. MAKER's inputs are minimal and its ouputs...2336 days ago