Results for "PYthon"
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CAMSA :: a tool for Comparative Analysis and Merging of Scaffold Assemblies
...ool for Comparative Analysis and Merging of Scaffold Assemblies, distributed both as a standalone software package and as Python library under the MIT license...2332 days ago
- ...results of TelomereHunter are visualized in several diagrams.TelomereHunter is available for download at the following address: https://pypi.python.org/pypi/telomerehunter/...
2297 days ago
- scikit-bio is currently in beta. We are very actively developing it, and backward-incompatible interface changes can and will arise. To avoid these types of change...
2269 days ago
ALPHA: A Toolkit for Automated Local Phylogenomic Analyses
Automated Local Phylogenomic Analyses, or ALPHA, is a python-based application that provides an intuitive user interface for phylogenetic analyses and data visualization. It has four...2249 days ago
DendroPy: a Python library for phylogenetic computing
DendroPy is a Python library for phylogenetic computing. It provides classes and functi...at: http://dendropy.org/ DendroPy is also hosted in the official Python repository: http://packages.python.org/DendroPy/ Requirements...2217 days ago
SALSA: A tool to scaffold long read assemblies with Hi-C
...und in the old_salsa branch. To use the latest version, first run the following commands: cd SALSA make To run the code, you will need Python 2.7, BOOST libraries and Netw...2164 days ago
KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
...or a set of K-mer histograms that are derived from selected rows or columns in a matrix produced by the "comp". In addition, KAT contains a python script for analysing the math...1994 days ago
FinisherSC:a repeat-aware tool for upgrading de novo assembly using long reads
Here is the command to run the tool: python finisherSC.py destinedFolder mummerPath If you are running o...then the following commands can generate 20 threads to run FinisherSC. python finisherSC.py -par 20 destine...2098 days ago
Snakemake—a scalable bioinformatics workflow engine
Snakemake is a workflow engine that provides a readable Python-based workflow definition language and a powerful execution environment that scales from single-core workstations to compute clusters without modifying the workflow.2084 days ago
sim3C: Read-pair simulation of 3C-based sequencing methodologies (HiC, Meta3C, DNase-HiC)
Required python modules biopython intervaltree numpy scipy tqdm PyYAML2012 days ago
