Results for "Paired end sequencing"
Blogs
String graph based genome assembly software and tools !
In graph theory, a string graph is an intersection graph of&...s from the corrected reads. The third phase uses paired end and/or mate pair data to buil...o remove the branches based on read coverage and paired-end inform...2342 days ago
Installing Perl environment on Linux
By using plenv, you can easily install and switch among different version of Perl. This will be installed u...ver. echo means "print". >> means adding the output into the end of the...2335 days ago
List of cancer genomics research web resources !
Major web resources for cancer genomics research CGHub h...er.ac.uk Largest somatic mutation database; genome sequencing paper curation CPRG h...e.org/ Data analysis; automatic pipelines; user-friendly reports SNP500Cancer http://snp50...2334 days ago
Bioinformatics tools developed for Oxford Nanopore data analysis !
MinION is the only portable real-time device for DNA and RNA sequencing. Each consumable flow cell can now generat...2334 days ago
BBTools for bioinformatician !
...ng rate. Using Paired-end and single-end reads at the same...nondeterministic when run in paired-end mode with multiple threads, b...e saturation curves to assess sequencing depth Code: $ b...ode, once the line hits zero, sequencing more is not useful.In cumulat...2284 days ago
Basic command-line to run BLAST
The goal of this tutorial is to run you through a demonstration...are in fasta format, even though they end if ”.faa” instead...alue] [-gapopen open_penalty] [-gapextend extend_penalty] [-qcov_hsp_pe...alue] [-gapopen open_penalty] [-gapextend extend...2258 days ago
- LiftOver is a necesary step to bring all genetical analysis to the same reference build. LiftOver can have three...fficiently intersects multiple chains Boundary problem: Missing start or end base i...
2174 days ago
- Download this https://github.com/trinityrnaseq/trinityrnaseq/relea...d by make... GNU checking dependency style of g++... gcc3 checki...-promo -Woverloaded-virtual -Wendif-labels -O3 -ggdb3 -DMAKE_...'--max_memory 10G' # # If paired reads: # --left...s, no spaces) # # Or, if unpaired rea...
2147 days ago
- AWK is a standard tool on every POSIX-compliant UNIX system. It’s like fle...true # BEFORE any of the files are read. The END pattern is true after # an End-of-file from the last file (o...s++; } # Another special pattern is called END. It wi...
1849 days ago
Perl one-liner for beginners !
I often use the following arguments to perl: -e Makes the line of co...be called in a loop. Prints $_ at the end This counts the...bsp;inFile > outFile Append a new line to each line...is not a letter, white space or line end (repla...1395 days ago
