Results for "Paired end sequencing"
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...unwanted sequence from your high-throughput sequencing reads. Cleaning your dat...way is often required: Reads from small-RNA sequencing contain the 3’ s...can contain IUPAC wildcard characters. Also, paired-end reads and even colorspace data is su...2928 days ago
- Platanus is a novel de novo sequence assembler that can reconstruct genomic sequences of highly heterozygous diploids from massively parallel shotgun sequencing data. The latest version is...
2928 days ago
Hagfish - assess an assembly through creative use of coverage plots
...ata analysis of Next Generation Sequencing (NGS) experiments. Hagfis...ctural variation in a genome re-sequencing experiment. Hagfish requ...a reference sequence and a paired end re-sequencing data set....e larger the insert size of the paired end library is. Quick links: Insta...2920 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-s...mapping second and third-generation sequencing reads to a reference genome....ign reads generated by all the major sequencing technologies, including Illum...mappings for all the generated data (sequencing technologies, low-coverage an...2920 days ago
- Stampy is a package for the mapping of short reads from illumina sequencing machines onto a reference genome. It's recommended for most workflows, including those for genomic resequencing, RNA-Seq and Chip-seq. Stampy...
2920 days ago
- methylKit is an R package for DNA methylation...annotation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data from RRBS and its varian...It can also handle whole-genome bisulfite sequencing data if proper input format i...
2907 days ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to vi...onal Biology special issue : Quality assessment and control of high-throughput sequencing data). It contains bash/perl...
2897 days ago
- LoRMA is a tool for correcting sequencing errors in long reads such those produced by Pacific Biosciences sequencing machines. Publication: L....
2180 days ago
CovCal: Coverage / Read Count Calculator
Coverage / Read Count Calculator Calculate how much sequencing you need to hit a target depth of coverage (or vice versa). Instructions: set the read length/configuration and genome size, then s...2180 days ago
CNIDARIA: fast, reference-free phylogenomic clustering
Motivation: Identification of biological specimens is a major requirement for a range of applications. Reference-free methods analyse unprocessed sequencing data without relying on prior...2893 days ago
