Results for "Paired-end"
Comments
Comment on "Short-read assembly using Spades !"
...n FASTQ format, which contains the sequencing reads. If the reads are paired-end, they should be provided in s...astq and read2.fastq with the names of the input files containing the paired-end reads, and <output_dir>...433 days ago
Comment on "List of non-commercial NGS genotype-calling software"
Delly – Structural variant discovery by integrated paired-end and split-read analysis. [ paper-2012 ] lumpy – lumpy: a general probabilistic framework f...1155 days ago
- kallisto can process either single-end or paired-end reads. The default running mode is paired-end and requires an even number of FASTQ files represented as pairs, e.g. kallisto quant -i index -o ou...
1374 days ago
Comment on "Genome in a Bottle (GIAB) Consortium"
Benchmark (or "High-confidence") variant calls and regions:We developed an integration pipeline to utilize sequencing data generated by multiple technologies to generate...1572 days ago
- ...lity control, with some added functionality to remove biased methylation positions for RRBS sequence files (for directional, non-directional (or paired-end) sequencing)....
2150 days ago
- ...ontigs is determined according to paired-end (mate-pair) data and constructs scaffolds. Finally, paired-end reads localized on gaps in s...--------------------- Map paired-end (mate-pair) reads on contigs,...see "***** NOTE ***** Paired-end (Mate-pair) input" below...
2812 days ago
Comment on "Software packages for next gen sequence analysis"
...s a scaffolder and a reference-free evaluator of assembly quality. It uses a draft genome assembly, a genome map, and high-throughput sequencing paired-end data. It has been succesfully...2921 days ago
Comment on "List of popular bioinformatics software/tools"
skewer (transferred from https://sourceforge.net/projects/skewer) implements the bit-masked k-difference matching algorithm dedicated to the task of adapter trimming and it is specially designed for processing next-generation sequencing (NGS) paired-end sequences. https://github.com/relipmoc/skewer3585 days ago
