PilonGrid: parallel wrapper around the Pilon framework
The distribution is a parallel wrapper around the Pilon framework The pipeline is composed of bash scripts, an example mapping.fofn which shows how to input your fastq files (you give paths to the R1 file), and how to launch the pipeline.1984 days ago
NanoPack: visualizing and processing long-read sequencing data
The NanoPack tools are written in Python3 and released under the GNU GPL3.0 License. The source code can be found at https://github.com/wdecoster/nanopack, together with...1971 days ago
ZENBU: a collaborative, omics data integration and interactive visualization system
ZENBU is a data integration, data analysis, and visualization system enhanced for...based data. ZENBU allows for novel data exploration through "on-demand" data processing and interactive linked-visual...1961 days ago
molinspiration: broad range of cheminformatics software tools supporting molecule manipulation
Molinspiration offers broad range of cheminformatics software tools supporting molecule manipulation and processing, including SMILES and SDfile...1946 days ago
1944 days ago
OMTools: a software package for visualizing and processing optical mapping data
OMTools, an efficient and intuitive data processing and visualization suite to handle and explore large-scale optical...rofiles. OMTools includes modules for visualization (OMView), data processing and simulation. These modules...1878 days ago
GffCompare: Program for processing GTF/GFF files
The program gffcompare can be used to compare, merge, annotate and estimate accuracy of one or more GFF files (the “query” files), when compared with a reference annotation (also provided as GFF).1776 days ago
MSAProbs - Parallel and accurate multiple sequence alignment
MSAProbs is a well-established state-of-the-art multiple sequence alignment algorit...by employing a multi-threaded design, and further parallelized for distributed-memory sy...ome high memory overhead barrier and achieve good parallel a...1775 days ago
1702 days ago
Shouji: a fast and efficient pre-alignment filter for sequence alignment
...enerate massive amounts of sequencing data continues to overwhelm the processing capacity of existing algori...n analyzing sequenced genomes. We introduce Shouji, a highly parallel and accurate pre-alignment filt...1658 days ago