Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genomics Workbench - de novo and reference assembly of...t on early versions of SSAKE. * Velvet - Velvet is a de novo genomic assembler specially designed for short read seq...3245 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...Input: Output: Atlas 2 Description: specializes in separation of true S...dquo;; integrates four algorithms; written in Perl; required tools: samtools, tabix...sequence based disease association studies, especially for automated set-generatio...2911 days ago
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file...in all selected parallel assemblers. Specially, in the scalability test, S...ustering and Assembling Short Reads, especially for RAD Rainbow package...lso called haplotype assembly. It is especially suitable for long reads, bu...2688 days ago
Perl Special Vars Quick Reference
$_ The default or implicit variable. @_ Subroutine parameters. $a$... perlvar for detailed descriptions of each of these (and a few more) special variables.2646 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks, libraries and software. major/MySQLTuner-perl - MySQLTuner is a script written in Perl that will assist you with your...2491 days ago
2491 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from...isjoint transcript clusters; uses sig-mers, a special type of k-mers) Softwar...r (uses the concept of “minimazers”, a special type of k-mers) Softwar...2373 days ago
Edit distance application in bioinformatics !
There are other popular measures of edit distance, which are calculated using a different set of allowable edit operations. For instance, the Damerau&ndash...2343 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subsystems in the SEED da...on. Annotate Sequence in KEGG Mapper and Pathogen Checker in KEGG Pathogen are special interfaces to this server and...2334 days ago
Bioinformatics Web Application Development with Perl
Perl's second wave of adoption came from the growth of the world wide web. Dynamic...plication meant putting one or more .cgi or .pl files in a special directory and hoping that you...2324 days ago