2020 days ago
sim3C: Read-pair simulation of 3C-based sequencing methodologies (HiC, Meta3C, DNase-HiC)
Required python modules biopython intervaltree numpy scipy tqdm PyYAML2013 days ago
ANItools web: a web tool for fast genome comparison within multiple bacterial strains
ANItools is a software package written by PERL scripts that can be run in a Linux/Unix system. If you want to compare bacterial genomes and calculate their average nucleotide...2012 days ago
1978 days ago
Biotite: A general framework for computational biology
The package is open source and freely available at GitHub (https://github.com/bioti...re, databases, and application. The sequence and structure modules serve for the analysis of seq...1978 days ago
Versatile genome assembly evaluation with QUAST-LG
QUAST-LG is an extension of QUAST intended for evaluating large-scale gen...of new fast aligner (minimap2) and the refactoring of alignment analyzing modules New k-mer-based completeness...1974 days ago
1963 days ago
LTR_Finder: an efficient program for finding full-length LTR retrotranspsons in genome sequences.
LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in g...to identify PBS, PPT and RT inside LTR pairs by build-in aligning and counting modules. RT identification includes a...1952 days ago
1952 days ago
1944 days ago