Results for "Perl Script"
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Popular bioinformatics educational resources !
Followings are the list of popular bioinformatics educational resources Bii.a-star.edu.sg Bio researc...by the University of Tampere and the University of Turku, Finland. Perlsource.net Provides online courses in Perl p...2204 days ago
Install ImageMagick from Unix Source
.... not found!checking for Ghostscript fonts directory... /usr/share...ng for tar... tarchecking for perl... perlchecking for rpmbuild......mandsconfig.status: executing PerlMagick/check.sh.in commandsconfi...ies/magick.1 utilities/magick-script.1 utilities/mogrify.1 utiliti...2158 days ago
Converting a VCF into a FASTA given some reference !
Samtools/BCFtools (Heng Li) provides a Perl script vcfutils.pl which does thi...nction vcf2fq (lines 469-528) This script has been modified by others t...t.fastq> https://github.com/gringer/bioinfscripts/blob/master/vcf2fq.pl https...2128 days ago
- ...uage. Why use AWK instead of Perl? Readability. AWK is easier to read than Perl. For simple text-processing scripts, particularly ones that read...# it feel sort of like shell scripting, but to get the same outpu...e a string so you close it properly) cmd = "echo foobar";...
1847 days ago
List of perl special symbols !
There are some variables which have a predefined and special meaning in Perl. They are the variables that use punctuation...Special Symbols – File handlers $@ Perl error string $! Error number...More at https://www.tutorialspoint.com/perl/p...1571 days ago
Perl one-liner for beginners !
...se the following arguments to perl: -e Makes the line of code be executed instead of a script -n Forces your line to be...e any uppercase letters. perl -ne 'print unless m/[A-Z...nless it contains a number perl">perl -lane 'print $F[1...1393 days ago
Protocol for De novo Genome Assembly using Illumina Reads
In this protocol, we address and describe the de novo as...Read Quality Control:Check the qualiy with fastQC.Scripthttps://bioinformaticsonline.c...ers, barcodes and other contaminants from the reads.Scripthttps://bioinformaticsonline.c...1216 days ago
Run bash script in Perl program !
BioPerl is a compilation of Perl modules that can be used to build bioinformatics-related Perl scripts. It is used, for example,...ertain Unix/shell commands in Perl script, so it's hard to determine...it can be easily converted to Perl script: For further informatio...649 days ago
- REST API The Representational State Transfer (REST) sample clients are prov...Language Download Requirements Perl psiblast.pl LWP and&nb...up for REST Web Services and Examples for Perl R...
956 days ago
- SLURM commands The following tabl...he SOE cluster. CommandDescription sbatch Submit batch scripts to the cluster scancel...s not specified in the submit script, SLURM will assign the defaul...rectory created by the submit script on a node: sdel &l...
681 days ago
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