Results for "Perl Script"
Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
...r you need to install several perl modules and dependencies. Installing Perl modules manually by resolving...nbsp; 00:00(3/5): perl-CPAN-1.9205-31.fc9.i386.rpm&n...quick and best way to install Perl modules, Bioperl. Following a...operl-run - BioPerl wrappers: scriptslibbio-perl-perl - BioPerl co...3947 days ago
Five unique traits of effective computational biologist
...s research is driven by large set of software, scripts, and tools to analyse giga...rete term, the bad biological programmer learn Perl's regular expression when the...t biological programmer also read about the BioPerl packages, genomics, DNA string,...3947 days ago
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Bookmarks
- Nice step wide information on perl module installation.
3947 days ago
- Citrus Perl is a binary distribution of Perl created for GUI application developers. The distribution includes wxPerl, the Perl wrapper for wxWidgets. Where supported by the operating system wxWidgets is available as a package for the 2.8.x stable branch and the 2.9.x development branch.
3914 days ago
- +78 more Bookmarks
Files
Regular Expression Cheat Sheet
The Regular Expression are the sole of Perl language, and for bioinformatician it is just a magical stick to resolve gingatic string data. We did not find any good and user...3950 days ago
Detect the sequence pattern and its location in fasta file with match and mismatches information.
This script is one of my old script to detect some centromeric pattern in chromosomes. User can also control the number of mismatches allowed through command line .. To run: perl centro.pl3865 days ago
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Discussion topics
- Why bioinformatician still using Perl when Python is easy to code, good in ReXp and faster than perl?
3948 days ago
- I'm new to bioinformatics and recently started learning Perl. I found several rival distributio...s if necessary. Whereas ActivePerl has a lot of prepackaged modu...l with PPM. In addition, DWIM Perl contains the standard Perl an....citrusperl.com/ http://strawberryperl.c...
3913 days ago
Pages
- Ruby was created by Yukihiro Matsumoto, who wished to create a new langua...guage that combines syntax inspired by Perl with Smalltalk-like features....sumoto. It was influenced primarily by Perl, Smalltalk, Eiffel, and Lisp....similar in varying respects to Python, Perl,...
3944 days ago
- I found several useful bioinformatics articles which exa...um. By Russ Altman. Human Genome Research A description of the Human Genome Projec...formatics in Support of Molecular Medicine A description of bioinformatics and its...
3918 days ago
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Top-level pages
- The completion of the first human genome drafts was just...e next step after reading genetic code is writing a script to analyse and explore the hi...s with their packages/libraries, and assist in your scripting work. Navigate the sub-se...
3945 days ago
Bioinformatics Courses Around the World
...120M (bioinformatics programming (2)); BIOL5160M (bioinformatics of transcriptomic and proteomics); BIOL51...formatics and Computatinal Biology (Ames, Iowa) Perl Programing Course for Bioinform...3940 days ago
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Wire posts
News
Bioinformatics: Introduction to PERL
This course is aimed at those new to programming and provides an introduction to programming using Perl. By the end of this course, a...tendees should be able to write simple Perl programs and to understand mo...ll be taught using the online Learning Perl m...3948 days ago
Perl Maven tutorial by Gabor Szabo
I personally reccoment this tutorial for Perl users. More detail http://perlmaven.com/3919 days ago
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Opportunity posts
Structural polymorphism analysis from NGS data
...tdb.eu, AMAIZING http://www.amaizing.fr/). The position requires a doctoral degree (PhD) in bioinformatics with strong expertise in script writing (Python/Perl) and pipeline development....3946 days ago
- ...rerequisite for this position. Experience with high throughput sequencing analysis methods, machine learning, protein interaction databases, perl/python scripting or BioconductoR are prefer...
3946 days ago
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Fun
Perl Poem: Parse it in both Perl and English!
Larry's, er, corpus has fortunately been overshadowed by that of the reigning Perl Poet, Sharon Hopkins. She has written quite a few Perl poems, as well as a paper on...es: Computer Poetry Meets the Perl Programming Language". (The p...and the Guardian: #!/usr/bin/perl APPEAL: listen (please, ple...3916 days ago
Bioinformatician special skills !!
Bioinformatician and Computational biologist are the only programmers on Earth who can explain multiplication and...)$/; /"(?:[^"\\]++|\\.)*+"/; /^[+-]?\ *(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?$/; perl -...3893 days ago
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Video
Bioinformatics 101 - Running BLAST
How to format the database for BLAST, run the command, view the output file, and use BioPerl and Perl to parse the output. By David Francis, Ohio State University. Delivered live at the Tomato Disease...3894 days ago
- Illustration and Animation: Rachel Robinson Script: Tiffany Trent Voice-over: Kris Monger Sound: Glisten Carefully by Guennadi Malyshevski
3900 days ago
Bio-Scripts
- (JitMetaENV) ➜ JitMeta conda install grabseqs -c louiejtaylor -c bioconda -c conda-forge Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1214 days ago
- # To follow these instructions, we'll assume your system admins have alre...er where you want to install different Perls, and cd into it: # Note tha...ant to maintain such software: export PERL_BASE="$HOME/perl" mkdir -p $...MSKCC: curl -sL https://cpanmin.us | $PERL_B...
2141 days ago
- +226 more Bio-Scripts
Groups
Perl(Practical Extraction and Reporting Lan...preted, dynamic programming languages. Perl was originally developed by L...Wall in 1987 as a general-purpose Unix scripting language to make report processing easier. But, nowadays perl is the heart of biological/geno...3950 days ago
Ruby is a dynamic, reflective, general-purpose object-oriented programming language that combines syntax inspired by Perl w...3917 days ago
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Tags
Why the Perl script flash error and print weird lines once change the operating system?
Hi Bioinformatician, I am working on a small script which read a file and extract the gene coordinates. It works fine when I run on linux OS but in Window OS it print some weird sign, and also does not print the expected result. Following are the code for your reference. #!/usr/bin/perluse str...Tags: Perl, Syntax Error, Operating System, Perl script
3919 days ago
How to find Operating System name using perl script?
Hi All, Recently I started working on severs/clusters for my biological analysis. I am struggling to find the operating system(OS) detail information before running my scripts. Can you please tell me how to find OS name using perl script?Tags: Perl, OS, Operating System, Linux, Windows, Mac, Bioinformatics, Perl Script
3922 days ago
Comments
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
To install BioPerl on a macOS system, you can fo...brew update Install Perl by entering the following command: brew install perl Install cpanminus by...allation by running a BioPerl script or entering the following c...s online or consulting the BioPerl documentation....419 days ago
Comment on "Perl Module Installation"
To install BioPerl on a macOS system, you can fo...brew update Install Perl by entering the following command: brew install perl Install cpanminus by...allation by running a BioPerl script or entering the following c...s online or consulting the BioPerl documentation.419 days ago
- +6 more Comments
