Results for "Phylogenetic"
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The Environment for Tree Exploration (ETE) is a Python programming toolkit that assists in the recontruction, manipulation, analysis and visualization of phylogenetic trees (although clustering trees or any other tree-like data structure are also supported). Other tools https://github.com/shenw...Tags: Environment, Tree, Exploration, ETE, Python, toolkit, recontruction, manipulation, analysis, visualization, phylogenetic, trees
1620 days ago
ForBio and UiB course: Introduction to phylogenetic methods
The is an introductory course that is aimed at students who will need to preform phylogenetic analyses in their work, but who have little or no experience with phylogenetic analyses. The ForBio component of the course is focused on the practical aspects of phylogenetic analyses and students that ...Tags: ForBio, UiB, course, Introduction, phylogenetic, methods
1600 days ago
Orthoflow: workflow for phylogenetic inference of genome-scale datasets of protein-coding genes
Orthoflow is a workflow for phylogenetic inference of genome-scale datasets of protein-coding genes. Our goal was to make it straightforward to work from a combination of input sources including annotated contigs in Genbank format and FASTA files containing CDSs. It uses several state of the art ...Tags: Orthoflow, workflow, phylogenetic, inference, genome-scale, datasets, protein-coding, genes
73 days ago
MIKE: an ultrafast, assembly-, and alignment-free approach for phylogenetic tree construction
MIKE (MinHash-based k-mer algorithm). This algorithm is designed for the swift calculation of the Jaccard coefficient directly from raw sequencing reads and enables the construction of phylogenetic trees based on the resultant Jaccard coefficient. Simulation results highlight the superior sp...Tags: MIKE, ultrafast, assembly, alignment-free, approach, phylogenetic, tree, construction
26 days ago
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