Results for "Phylogenies"
Blogs
Computer simulation of genetic mechanism !!
...ofile-based Illumina pair-end reads simulator https://code.google.com/p/pirs/ ProteinEvolver Simulation of protein evolution along phylogenies under structure-based substit...2978 days ago
- ...loped to compute physical maps of extant genomes. Cocos Constructs phylogenies of multi-domain proteins. With a given species tree and domain phylogenies, the procedure infers the com...
2534 days ago
Bookmarks
- This is the andi program for estimating the evolutionary distance between closely related genomes. These distances can be used to rapidly infer phylogenies for big sets of genomes. Beca...
2918 days ago
dbCAN: a web server and DataBase for automated Carbohydrate-active enzyme ANnotation
...ies; dbCAN make all pre-computed data freely available to the public, including sequence alignments, hidden markov models (HMMs) and phylogenies of the signature domain regio...2537 days ago
- +4 more Bookmarks
Top-level pages
Phylogenetic for Bioinformatics
...netic trees. Due to the fact that evolution takes place over long periods of time that cannot be observed directly, biologists must reconstruct phylogenies by inferring the evolutionary...3950 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...sim-gitpIRS Profile-based Illumina pair-end reads simulator https://code.google.com/p/pirs/ProteinEvolver Simulation of protein evolution along phylogenies under structure-based substit...3741 days ago
News
- PhylomeDB is a public database for complete collections of gene phylogenies (phylomes). It allows users to interactively explore the evolutionary history of genes through the...
3922 days ago
Opportunity posts
2 positions on the evolutionary analysis of biological sequences in Montpellier - France
...of large-scale genomic data -- including the inference of very large phylogenies, gene/species tree reconcilia...netic network inference and verification, phylogeography, the use of phylogenies to study the evolution of cha...3146 days ago
Tags
DeCoSTAR: Reconstructing the Ancestral Organization of Genes or Genomes Using Reconciled Phylogenies
DeCoSTAR computes adjacency evolutionary scenarios using a scoring scheme based on a weighted sum of adjacency gains and breakages. Solutions, both optimal and near-optimal, are sampled according to the Boltzmann–Gibbs distribution centered around parsimonious solutions, and statistical sup...Tags: DeCoSTAR, Reconstruction, Ancestral, Organization, Genes, Genomes, Reconciled, Phylogenies
1587 days ago
Introduction to phylogenies in R
R phylogenetics is built on the contributed packages for phylogenetics in R, and there are many such packages. Let's begin today by installing a few critical packages, such as ape, phangorn, phytools, and geiger. To get the most recent CRAN version of these packages, you will need to have R 3.3.x...Tags: Introduction, phylogenies, R, Tools
939 days ago
Comments
Comment on "R and Bioconductor Tutorial"
Phylogenetic capabilities in R http://www.r-bloggers.com/phylogenies-in-r-and-python/3621 days ago
